| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773445
Identifier: 119773445
GI number: 119773445
Start: 369739
End: 372060
Strand: Direct
Name: 119773445
Synonym: Sama_0304
Alternate gene names: NA
Gene position: 369739-372060 (Clockwise)
Preceding gene: 119773444
Following gene: 119773446
Centisome position: 8.59
GC content: 54.69
Gene sequence:
>2322_bases ATGAAAACAATAACTCTGAAAGAGGGCGCCCTGTCCTTACCACGTCTGACACCCTTGTTGTTAACCCCAACGCTGTTGAC CTTCTCCTTACTCACGGCAGTGGGCTGTACGACTACCCACGGCACCTCAAATGCTCAGCAGGTGCACGCCGAGTCCCCGG CGCAAAGCGAAGCCCTCAACCATGTGGATCCTTTTATCGGCACAGGTGGCCATGGTCACACCTTTCCCGGTGCTTTGGTC CCCTTTGGCATGGTGCAGTTGAGCCCGGATAACCCATCCAAGGGCTGGGATTGGACCTCGGGTTATCACTATTCTGACGA TACCTTGCTGGGCTTCAGCCACACCCACTTATCAGGCACTGGCGTGGGCGACATGCTGGATGTGCTGGTGATGCCCTTTC GCGGCGACTTTCTGAGCCGCCCAAGAGACGACAAAGACCGTATCTTCACCCACTATGGCCATGACAAAGAGAGTGCGACG CCGGGCTATTACAGCCTGTATTTGCCGGAAGAACAGGTGCAGGTGGAGCTGACCGCCTCCACCCGCGCCGGGGTTCACCG CTACCGCTTTGATGGTGACACAGATGCAAAGCTATTGATTGATTTGGGTTATGCCCAAAACTACGACAAACCCGTGGTGA CCTTCCTGCGGGTCGAAGATGAGCACACCTTAAGTGGTTATCGGTTATCTACCGGTTGGGCCAAAAATCAGCCGCTGTAT TTTGTGGCGAAATTTGATCAGCCCTTCAGTCATCAACTCTACAGCGAAAACCAGCCCATCAAGGGTGAGCAGCTACAGGC CGAAAAAGGCCGCATAGTGCTGAACTTTGGTTTTTCGTCGACCGGTTCTTTGTCGACCGGTTCTTCGTCGGCTGCTTCTT CTGCCGAGAAAACTGCAAAAGTGGTGGAGGCCAGGGTCGCCCTGTCTTACACCAGCATTGCCGGTGCCAAGGCGAACCTG AAGGCCGAAGTGGCCGACCTGAGCTTTGCCCAAATCAAAGCCAATGCCCGTCAGGCCTGGGCGCAGCAGCTTGGAAAGTT CGAGGTTGAAGACGGCAACGAGGTCAACAAGACCAAGTTTTACACCGCGCTCTACCATGCCTTTGTCGCGCCCCAGGTAT TCCATGATGTGGATGGCGCCTTTTTCGGTGCCGATGGTGCCGCCCATGCCAACCCGGGCTATGGCCGTTATTCATTGTTC TCACTCTGGGACACCTTCAGGGCTCTGCATCCGCTGCTGACGGTCAGCAACCCCGAGCGGGTCGATGACATGGTCAAGTC CATGCTGGGCTTTTATGACGAGACCGGGCTACTGCCCACCTGGGACCTGATGTCCAACGAAACCGACGTGATGATTGGAT ACCATGCGGTGCCCGTGATTGTGGACGCCTATCTAAAGGGTTTAACAACCGCGGACCCAGAACACATCTACGCCGCCATC AAGGCCTCGGCAATGCAGGATAGATTTGGCATCGACAAGTTCCGGGAATACGGCTTCGTGCCTTCGGATCTGGAAATTGA GGCCGTGTCCAAAACCCTGGAATATGCCTTCGATGACTGGGCAATAGCACAAATGGCCAAAGCGCTTGGCAAAACTGAAG ACTATCAGGTGTTCAATCAACGTGCTCAGAGCTACAAAACCCTGTTTGACGCTGAAACCGGCTTTATGCGCGGCAAGGAT CATCAAGGTAACTGGGTAACGCCTTTCAATCCCACCTATGTGGAGCACCGCAACACCGACTACACCGAGGCCAATGCCTG GCAGTACAGCTTCTTTGTGCCCCATGACGTACCGGGCCTAATGGCCTTGTACGGAAATGAGCAGCGCTTTGTGGCCAAAC TGGATGAGCTTTTCTCCACCAGTTCTGAGATGCAGGGGGATGTATCCCCGGATATTTCAGGGCTTATTGGCCAATACGCC CACGGCAATGAGCCTGTGCATCATGTTGCCTACCTGTATGCCTTTACCGATAAAAAGCAGCAAGGTGAAGCGCGTATCAA AGAAATCCGTGACACCATGTATCTGGCGCAGCCCGATGGTCTGGCCGGAAACGATGACCTGGGTCAGATGTCGGCCTGGT ATGTGTTCAGCGCTTTGGGCTTCTATCCGCTGAATCCCGTTGGCGGCGACTACGTACTCGGCACCCCTCAGTTCGCCAAA GCGACCGTGATGCTGCCCAATGGCAAAGCGTTCAAGGTAATCAAGAAAGGCGAGGGATGGGTGAAGGCCCTGTGGCTTAA TGGCAAAAAGCACGATAGCGCCATCCTCACCCATCAGCAGCTATTGGACGGCGGAGAACTGGTTTTCGAATTGGCTGAAT AA
Upstream 100 bases:
>100_bases TGGTTATCCAGCAATGGACTCAGGTGTGGGTGGCACTGGCACTGGCGATACTGACATCCTGGTTCCTGAAGAAAAACTGG TTGGATAAGTTGAAAGATTA
Downstream 100 bases:
>100_bases GCCGTAGTGACAGTCGCTGTGGGTTGGGCGCCCAATTGTTGATGAACGCTTTTGTGCGCCTTCCTCGTTTGCCAAATACA GCAAACAACCCTAAACAGCT
Product: putative alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Sugar Hydrolase; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Immunoreactive; Exported Alpha-1 2-Mannosidase; Antigen; Alpha-1 2-Mannosidase Protein; Lipoprotein
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MKTITLKEGALSLPRLTPLLLTPTLLTFSLLTAVGCTTTHGTSNAQQVHAESPAQSEALNHVDPFIGTGGHGHTFPGALV PFGMVQLSPDNPSKGWDWTSGYHYSDDTLLGFSHTHLSGTGVGDMLDVLVMPFRGDFLSRPRDDKDRIFTHYGHDKESAT PGYYSLYLPEEQVQVELTASTRAGVHRYRFDGDTDAKLLIDLGYAQNYDKPVVTFLRVEDEHTLSGYRLSTGWAKNQPLY FVAKFDQPFSHQLYSENQPIKGEQLQAEKGRIVLNFGFSSTGSLSTGSSSAASSAEKTAKVVEARVALSYTSIAGAKANL KAEVADLSFAQIKANARQAWAQQLGKFEVEDGNEVNKTKFYTALYHAFVAPQVFHDVDGAFFGADGAAHANPGYGRYSLF SLWDTFRALHPLLTVSNPERVDDMVKSMLGFYDETGLLPTWDLMSNETDVMIGYHAVPVIVDAYLKGLTTADPEHIYAAI KASAMQDRFGIDKFREYGFVPSDLEIEAVSKTLEYAFDDWAIAQMAKALGKTEDYQVFNQRAQSYKTLFDAETGFMRGKD HQGNWVTPFNPTYVEHRNTDYTEANAWQYSFFVPHDVPGLMALYGNEQRFVAKLDELFSTSSEMQGDVSPDISGLIGQYA HGNEPVHHVAYLYAFTDKKQQGEARIKEIRDTMYLAQPDGLAGNDDLGQMSAWYVFSALGFYPLNPVGGDYVLGTPQFAK ATVMLPNGKAFKVIKKGEGWVKALWLNGKKHDSAILTHQQLLDGGELVFELAE
Sequences:
>Translated_773_residues MKTITLKEGALSLPRLTPLLLTPTLLTFSLLTAVGCTTTHGTSNAQQVHAESPAQSEALNHVDPFIGTGGHGHTFPGALV PFGMVQLSPDNPSKGWDWTSGYHYSDDTLLGFSHTHLSGTGVGDMLDVLVMPFRGDFLSRPRDDKDRIFTHYGHDKESAT PGYYSLYLPEEQVQVELTASTRAGVHRYRFDGDTDAKLLIDLGYAQNYDKPVVTFLRVEDEHTLSGYRLSTGWAKNQPLY FVAKFDQPFSHQLYSENQPIKGEQLQAEKGRIVLNFGFSSTGSLSTGSSSAASSAEKTAKVVEARVALSYTSIAGAKANL KAEVADLSFAQIKANARQAWAQQLGKFEVEDGNEVNKTKFYTALYHAFVAPQVFHDVDGAFFGADGAAHANPGYGRYSLF SLWDTFRALHPLLTVSNPERVDDMVKSMLGFYDETGLLPTWDLMSNETDVMIGYHAVPVIVDAYLKGLTTADPEHIYAAI KASAMQDRFGIDKFREYGFVPSDLEIEAVSKTLEYAFDDWAIAQMAKALGKTEDYQVFNQRAQSYKTLFDAETGFMRGKD HQGNWVTPFNPTYVEHRNTDYTEANAWQYSFFVPHDVPGLMALYGNEQRFVAKLDELFSTSSEMQGDVSPDISGLIGQYA HGNEPVHHVAYLYAFTDKKQQGEARIKEIRDTMYLAQPDGLAGNDDLGQMSAWYVFSALGFYPLNPVGGDYVLGTPQFAK ATVMLPNGKAFKVIKKGEGWVKALWLNGKKHDSAILTHQQLLDGGELVFELAE >Mature_773_residues MKTITLKEGALSLPRLTPLLLTPTLLTFSLLTAVGCTTTHGTSNAQQVHAESPAQSEALNHVDPFIGTGGHGHTFPGALV PFGMVQLSPDNPSKGWDWTSGYHYSDDTLLGFSHTHLSGTGVGDMLDVLVMPFRGDFLSRPRDDKDRIFTHYGHDKESAT PGYYSLYLPEEQVQVELTASTRAGVHRYRFDGDTDAKLLIDLGYAQNYDKPVVTFLRVEDEHTLSGYRLSTGWAKNQPLY FVAKFDQPFSHQLYSENQPIKGEQLQAEKGRIVLNFGFSSTGSLSTGSSSAASSAEKTAKVVEARVALSYTSIAGAKANL KAEVADLSFAQIKANARQAWAQQLGKFEVEDGNEVNKTKFYTALYHAFVAPQVFHDVDGAFFGADGAAHANPGYGRYSLF SLWDTFRALHPLLTVSNPERVDDMVKSMLGFYDETGLLPTWDLMSNETDVMIGYHAVPVIVDAYLKGLTTADPEHIYAAI KASAMQDRFGIDKFREYGFVPSDLEIEAVSKTLEYAFDDWAIAQMAKALGKTEDYQVFNQRAQSYKTLFDAETGFMRGKD HQGNWVTPFNPTYVEHRNTDYTEANAWQYSFFVPHDVPGLMALYGNEQRFVAKLDELFSTSSEMQGDVSPDISGLIGQYA HGNEPVHHVAYLYAFTDKKQQGEARIKEIRDTMYLAQPDGLAGNDDLGQMSAWYVFSALGFYPLNPVGGDYVLGTPQFAK ATVMLPNGKAFKVIKKGEGWVKALWLNGKKHDSAILTHQQLLDGGELVFELAE
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85520; Mature: 85520
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTITLKEGALSLPRLTPLLLTPTLLTFSLLTAVGCTTTHGTSNAQQVHAESPAQSEALN CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEECCCCHHHHHHH HVDPFIGTGGHGHTFPGALVPFGMVQLSPDNPSKGWDWTSGYHYSDDTLLGFSHTHLSGT HCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCCC GVGDMLDVLVMPFRGDFLSRPRDDKDRIFTHYGHDKESATPGYYSLYLPEEQVQVELTAS CHHHHHHHHHHCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEC TRAGVHRYRFDGDTDAKLLIDLGYAQNYDKPVVTFLRVEDEHTLSGYRLSTGWAKNQPLY CCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEE FVAKFDQPFSHQLYSENQPIKGEQLQAEKGRIVLNFGFSSTGSLSTGSSSAASSAEKTAK EEEECCCCHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH VVEARVALSYTSIAGAKANLKAEVADLSFAQIKANARQAWAQQLGKFEVEDGNEVNKTKF HHHHHHHEEEHHHCCCCCCCEEEHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHH YTALYHAFVAPQVFHDVDGAFFGADGAAHANPGYGRYSLFSLWDTFRALHPLLTVSNPER HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCHHH VDDMVKSMLGFYDETGLLPTWDLMSNETDVMIGYHAVPVIVDAYLKGLTTADPEHIYAAI HHHHHHHHHHHHCCCCCCEEHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHH KASAMQDRFGIDKFREYGFVPSDLEIEAVSKTLEYAFDDWAIAQMAKALGKTEDYQVFNQ HHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH RAQSYKTLFDAETGFMRGKDHQGNWVTPFNPTYVEHRNTDYTEANAWQYSFFVPHDVPGL HHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCC MALYGNEQRFVAKLDELFSTSSEMQGDVSPDISGLIGQYAHGNEPVHHVAYLYAFTDKKQ EEEECCCHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHCCCCCCHHHEEEEEEECCCCC QGEARIKEIRDTMYLAQPDGLAGNDDLGQMSAWYVFSALGFYPLNPVGGDYVLGTPQFAK CHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCE ATVMLPNGKAFKVIKKGEGWVKALWLNGKKHDSAILTHQQLLDGGELVFELAE EEEECCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECC >Mature Secondary Structure MKTITLKEGALSLPRLTPLLLTPTLLTFSLLTAVGCTTTHGTSNAQQVHAESPAQSEALN CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEECCCCHHHHHHH HVDPFIGTGGHGHTFPGALVPFGMVQLSPDNPSKGWDWTSGYHYSDDTLLGFSHTHLSGT HCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCEEECCCEEEEEEECCCCCC GVGDMLDVLVMPFRGDFLSRPRDDKDRIFTHYGHDKESATPGYYSLYLPEEQVQVELTAS CHHHHHHHHHHCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEC TRAGVHRYRFDGDTDAKLLIDLGYAQNYDKPVVTFLRVEDEHTLSGYRLSTGWAKNQPLY CCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEE FVAKFDQPFSHQLYSENQPIKGEQLQAEKGRIVLNFGFSSTGSLSTGSSSAASSAEKTAK EEEECCCCHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH VVEARVALSYTSIAGAKANLKAEVADLSFAQIKANARQAWAQQLGKFEVEDGNEVNKTKF HHHHHHHEEEHHHCCCCCCCEEEHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHH YTALYHAFVAPQVFHDVDGAFFGADGAAHANPGYGRYSLFSLWDTFRALHPLLTVSNPER HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCHHH VDDMVKSMLGFYDETGLLPTWDLMSNETDVMIGYHAVPVIVDAYLKGLTTADPEHIYAAI HHHHHHHHHHHHCCCCCCEEHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHH KASAMQDRFGIDKFREYGFVPSDLEIEAVSKTLEYAFDDWAIAQMAKALGKTEDYQVFNQ HHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH RAQSYKTLFDAETGFMRGKDHQGNWVTPFNPTYVEHRNTDYTEANAWQYSFFVPHDVPGL HHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCC MALYGNEQRFVAKLDELFSTSSEMQGDVSPDISGLIGQYAHGNEPVHHVAYLYAFTDKKQ EEEECCCHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHCCCCCCHHHEEEEEEECCCCC QGEARIKEIRDTMYLAQPDGLAGNDDLGQMSAWYVFSALGFYPLNPVGGDYVLGTPQFAK CHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCE ATVMLPNGKAFKVIKKGEGWVKALWLNGKKHDSAILTHQQLLDGGELVFELAE EEEECCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA