| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ageIM [H]
Identifier: 119773422
GI number: 119773422
Start: 328984
End: 330546
Strand: Direct
Name: ageIM [H]
Synonym: Sama_0281
Alternate gene names: 119773422
Gene position: 328984-330546 (Clockwise)
Preceding gene: 119773421
Following gene: 119773423
Centisome position: 7.64
GC content: 46.07
Gene sequence:
>1563_bases ATGTATCCAGAATCAATTCAAGTTGTTGATTTATTTGCTGGTCCTGGTGGTCTTGGGGAGGGCTTCTCCTCTGTTGACAG GACTTTTCAGATTCTGGTCTCGGCTGAAATGGACCCTTTCGCTCATCAAACTCTCCGTTTGAGAGCGTTTTATCGCTTAA TTTCTAACCATGCACCCAACGAATTGGATGATTACTTTGCGTTCTGTAATGGTGTTTCTGACAAACCTTATAGCTCGGAA ACTGAATCATTATGGGAAGACGCTGGCGAAGAAGCGTTGCAAATTGTGTTGGGTTCTGAGGACGGGAATGCTCGTCTGGA CAGCGCAATTAAGAAAGGTCTTAATAAAGATGCCCCATGGGTGTTGATTGGCGGGCCACCCTGTCAGGCATACTCCATGG TTGGTCGTGCCCGAAATAAAGGGAAGAAAGATTACAGACCTGAAGAAGATAATCGTCACTTCTTGTACAAAGAGTACCTG CGGATTATTCAGCAAAATAAGCCTACGGTCTTCGTCATGGAAAACGTTAAAGGAATTCTTTCTTCTACCGTAGGTGGAAA GCGAGTTTTTCATGAAATTCTTGATGACTTGTCGAATCCAGACGCGGCTTTAGGTGTTTCCGGCAGCGGTGAACGTTATG TAATTTGCTCTCTCGTTACAGATGCGCAGTACCATCATGGCGATGACGCTTCTAAGTTTGATGCTGGCCAATTTGTTATT CGTGCTGAAGACTATGGCATTCCCCAAGCCCGGCATCGTGTGATTTTGTTGGGTATCAAGCAATCTCATTTTGAGACCGT TATTGCCAGGGGACCATTGCCACTTCTTGAAAAAGCACCTGTGGTTTCCGTCAGAGATGTGATTGGTGATCTTCCAAAGC TTCGCAGTACTTTGTCCCGTGGTGGAGAAGCGGCGAAAGATTGGGATTCTGTTATTAAGCGTTATCTTCAAGGGCTGCTG TCAGAATCCCGAGGGCGGGGTGATGAGGACCTGGAGCATGAGTTTCAAAACACCTTAAATGCTGTTCGTCGGGATTTATC TAAAGGCTCTTTGCGCTACAAATGGAATCTTAGTGAGCAAAAGACTGGCACCTTGGATTGGTGGTATGGAAAAAACGCAG AAATGCTGAGCGTTGTTTTAAACCATGAGGCCAGAGGACACATGGATTCTGATTTAAAACGATACATGTATGCAGCTTGT TTTGCGAAGGCCCGCGGGGTATCACCGAAGGGCCATAAAGAGTTTAATTATGCTGGGCTGGCACCTGCCCATGAAAATTG GGAGAGCGGTAAATTTGCAGACCGATTCAGGGTTCAGGTTTATGACAAACCATCCACTACTGTGGTGAGTCACATATCCA AGGACGGCCACTATTTTATTCACCCAGACCCGGTCCAGTGTCGAAGTTTAACCGTGCGGGAAGCTGCCAGATTGCAGACA TTCCCGGATAACTACTTTTTCCAGGGCAACAGGACACAACAATTCCATCAGGTTGGTAATGCTGTTCCTCCTCTGTTGGC GTACAAGATAGCCAGGATTGTGAAGGAAATTATTGAAGGATAA
Upstream 100 bases:
>100_bases CCGTTTTGGTTGATCATGGGTACGGAACCCGTCGAAAACTACAAATTTGATGTTCTTTCAGGGTAGAATCCCGAAGTTCA ATTTAATATAGAGAGTTTCG
Downstream 100 bases:
>100_bases GCGCAGCTACAACATGTCCCGCATTCGGGGTGAGGATACCCGCCCCGAGATGTGGCTGAGGAAACGGATCCATGCGTTGG GGTTTCGTTATCGGCTGCAC
Product: modification methylase (cytosine-specific methyltransferase
Products: NA
Alternate protein names: M.AgeI; Cytosine-specific methyltransferase AgeI [H]
Number of amino acids: Translated: 520; Mature: 520
Protein sequence:
>520_residues MYPESIQVVDLFAGPGGLGEGFSSVDRTFQILVSAEMDPFAHQTLRLRAFYRLISNHAPNELDDYFAFCNGVSDKPYSSE TESLWEDAGEEALQIVLGSEDGNARLDSAIKKGLNKDAPWVLIGGPPCQAYSMVGRARNKGKKDYRPEEDNRHFLYKEYL RIIQQNKPTVFVMENVKGILSSTVGGKRVFHEILDDLSNPDAALGVSGSGERYVICSLVTDAQYHHGDDASKFDAGQFVI RAEDYGIPQARHRVILLGIKQSHFETVIARGPLPLLEKAPVVSVRDVIGDLPKLRSTLSRGGEAAKDWDSVIKRYLQGLL SESRGRGDEDLEHEFQNTLNAVRRDLSKGSLRYKWNLSEQKTGTLDWWYGKNAEMLSVVLNHEARGHMDSDLKRYMYAAC FAKARGVSPKGHKEFNYAGLAPAHENWESGKFADRFRVQVYDKPSTTVVSHISKDGHYFIHPDPVQCRSLTVREAARLQT FPDNYFFQGNRTQQFHQVGNAVPPLLAYKIARIVKEIIEG
Sequences:
>Translated_520_residues MYPESIQVVDLFAGPGGLGEGFSSVDRTFQILVSAEMDPFAHQTLRLRAFYRLISNHAPNELDDYFAFCNGVSDKPYSSE TESLWEDAGEEALQIVLGSEDGNARLDSAIKKGLNKDAPWVLIGGPPCQAYSMVGRARNKGKKDYRPEEDNRHFLYKEYL RIIQQNKPTVFVMENVKGILSSTVGGKRVFHEILDDLSNPDAALGVSGSGERYVICSLVTDAQYHHGDDASKFDAGQFVI RAEDYGIPQARHRVILLGIKQSHFETVIARGPLPLLEKAPVVSVRDVIGDLPKLRSTLSRGGEAAKDWDSVIKRYLQGLL SESRGRGDEDLEHEFQNTLNAVRRDLSKGSLRYKWNLSEQKTGTLDWWYGKNAEMLSVVLNHEARGHMDSDLKRYMYAAC FAKARGVSPKGHKEFNYAGLAPAHENWESGKFADRFRVQVYDKPSTTVVSHISKDGHYFIHPDPVQCRSLTVREAARLQT FPDNYFFQGNRTQQFHQVGNAVPPLLAYKIARIVKEIIEG >Mature_520_residues MYPESIQVVDLFAGPGGLGEGFSSVDRTFQILVSAEMDPFAHQTLRLRAFYRLISNHAPNELDDYFAFCNGVSDKPYSSE TESLWEDAGEEALQIVLGSEDGNARLDSAIKKGLNKDAPWVLIGGPPCQAYSMVGRARNKGKKDYRPEEDNRHFLYKEYL RIIQQNKPTVFVMENVKGILSSTVGGKRVFHEILDDLSNPDAALGVSGSGERYVICSLVTDAQYHHGDDASKFDAGQFVI RAEDYGIPQARHRVILLGIKQSHFETVIARGPLPLLEKAPVVSVRDVIGDLPKLRSTLSRGGEAAKDWDSVIKRYLQGLL SESRGRGDEDLEHEFQNTLNAVRRDLSKGSLRYKWNLSEQKTGTLDWWYGKNAEMLSVVLNHEARGHMDSDLKRYMYAAC FAKARGVSPKGHKEFNYAGLAPAHENWESGKFADRFRVQVYDKPSTTVVSHISKDGHYFIHPDPVQCRSLTVREAARLQT FPDNYFFQGNRTQQFHQVGNAVPPLLAYKIARIVKEIIEG
Specific function: This methylase recognizes the double-stranded sequence ACCGGT, causes specific methylation on C-? on both strands, and protects the DNA from cleavage by the AgeI endonuclease [H]
COG id: COG0270
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the C5-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1788271, Length=331, Percent_Identity=23.2628398791541, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018117 - InterPro: IPR001525 [H]
Pfam domain/function: PF00145 DNA_methylase [H]
EC number: =2.1.1.37 [H]
Molecular weight: Translated: 58415; Mature: 58415
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYPESIQVVDLFAGPGGLGEGFSSVDRTFQILVSAEMDPFAHQTLRLRAFYRLISNHAPN CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCC ELDDYFAFCNGVSDKPYSSETESLWEDAGEEALQIVLGSEDGNARLDSAIKKGLNKDAPW HHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHCCCCCCCE VLIGGPPCQAYSMVGRARNKGKKDYRPEEDNRHFLYKEYLRIIQQNKPTVFVMENVKGIL EEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHH SSTVGGKRVFHEILDDLSNPDAALGVSGSGERYVICSLVTDAQYHHGDDASKFDAGQFVI HHCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEE RAEDYGIPQARHRVILLGIKQSHFETVIARGPLPLLEKAPVVSVRDVIGDLPKLRSTLSR EECCCCCCHHCCEEEEEEECHHHHHHHHHCCCCCHHHCCCCHHHHHHHCCHHHHHHHHHC GGEAAKDWDSVIKRYLQGLLSESRGRGDEDLEHEFQNTLNAVRRDLSKGSLRYKWNLSEQ CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC KTGTLDWWYGKNAEMLSVVLNHEARGHMDSDLKRYMYAACFAKARGVSPKGHKEFNYAGL CCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC APAHENWESGKFADRFRVQVYDKPSTTVVSHISKDGHYFIHPDPVQCRSLTVREAARLQT CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCC FPDNYFFQGNRTQQFHQVGNAVPPLLAYKIARIVKEIIEG CCCCCEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYPESIQVVDLFAGPGGLGEGFSSVDRTFQILVSAEMDPFAHQTLRLRAFYRLISNHAPN CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCC ELDDYFAFCNGVSDKPYSSETESLWEDAGEEALQIVLGSEDGNARLDSAIKKGLNKDAPW HHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHCCCCCCCE VLIGGPPCQAYSMVGRARNKGKKDYRPEEDNRHFLYKEYLRIIQQNKPTVFVMENVKGIL EEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHH SSTVGGKRVFHEILDDLSNPDAALGVSGSGERYVICSLVTDAQYHHGDDASKFDAGQFVI HHCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEE RAEDYGIPQARHRVILLGIKQSHFETVIARGPLPLLEKAPVVSVRDVIGDLPKLRSTLSR EECCCCCCHHCCEEEEEEECHHHHHHHHHCCCCCHHHCCCCHHHHHHHCCHHHHHHHHHC GGEAAKDWDSVIKRYLQGLLSESRGRGDEDLEHEFQNTLNAVRRDLSKGSLRYKWNLSEQ CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC KTGTLDWWYGKNAEMLSVVLNHEARGHMDSDLKRYMYAACFAKARGVSPKGHKEFNYAGL CCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC APAHENWESGKFADRFRVQVYDKPSTTVVSHISKDGHYFIHPDPVQCRSLTVREAARLQT CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCC FPDNYFFQGNRTQQFHQVGNAVPPLLAYKIARIVKEIIEG CCCCCEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8901102 [H]