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The map label for this gene is ccmF [H]

Identifier: 119773389

GI number: 119773389

Start: 271790

End: 273766

Strand: Direct

Name: ccmF [H]

Synonym: Sama_0248

Alternate gene names: 119773389

Gene position: 271790-273766 (Clockwise)

Preceding gene: 119773387

Following gene: 119773390

Centisome position: 6.31

GC content: 54.12

Gene sequence:

>1977_bases
ATGATCCCGGAACTTGGACACTTTGCGCTGATAACAGGACTGGCATTTGCCTTACTGCTCAGCTGCGTGCCGCTCATTGG
GGTAGCGCGCAAAGATCAGTATCTGGTGCGTTACGCCTGGCCATTGGCTTACGGTATGTTTCTGTTCATTGCACTGTCTG
TTGTGACTCTGGCGTACAGCTTCGCGGTCGATGATTTTTCTGTTGCTTACGTGGCACACCATTCCAATTCTCAGCTTCCG
AGCTTCTTCAAGATAGCGGCCGTTTGGGGTGGTCACGAAGGCTCTCTGCTGTTTTGGGTATTCTCCTTGTCTGTATGGGC
TGCAGCCGTAGCCAAGTTCAGCAAAGGACTGGAAGAAGTCTTTACCGCCCGGGTACTGGCGGTGCTCGGTATGATTACTG
TGGGCTTCACCCTGTTTATGCTGCTGACCTCCAGCCCGTTCGAGCGCCTATTCCCTGCGCCGATGGAAGGTCGAGACCTA
AACCCCATGCTGCAGGACGTAGGCCTTATCTTCCACCCACCCATGCTGTATCTGGGATATGTGGGCTTCTCTGTCAGCTT
TGCCTTTGCGATTGCCGCACTGCTCAGTGGTCGTCTCGATTCTGCCTGGGCACGCTGGAGCCGTCCCTGGACACTGGCCG
CCTGGATTTTCCTGACCGGTGGTATTGCGCTGGGTTCCTGGTGGGCTTACTACGAGCTCGGCTGGGGTGGCTGGTGGTTC
TGGGATCCGGTCGAAAACGCGTCCTTTATGCCATGGCTGATTGGTACCGCACTGGTGCACTCACTGATTGTGACCGAAAA
GCGCGGTACCTTCCGTAACTGGACGGTACTGCTGTCTATCTTTGCCTTCTCTTTGAGTTTGCTCGGTACCTTTATTGTGC
GTTCCGGCGTGCTGACATCGGTGCACTCATTCGCTGCCGATCCAAGCCGCGGTATGTTTATTCTCTTACTGCTTGGTCTT
GCTATTGGTGGCTCACTCACACTGTTTGCGTTCCGTGCCAGTGAAATGAGCAGTCCAGCGAAGTTTGAACTCTGGTCAAA
AGAAACCATGCTGCTGGTATGTAACCTGCTGCTGACCGTTGCCTGTGGCACAGTGCTGCTGGGTACTCTTTACCCACTGC
TGATTGATGCGCTGGGCATGGGTAAGATTTCTGTAGGCCCACCATACTTCAATGCCGTATTTGTGCCCATCATCCTGGTG
ATGTTTGTGTTCATGGGTATCGGTCCTATTATCCGCTGGAAGAAAGCGAAAGAAGGTGAAGTGAAGCGTCAGCTGTTGAT
CCCGGCTATCGTCTCTGCGGTCGTAGGTATTGCAGTGCCTTTCATCGCTGGTGGCGCATTCAACGCCTGGGTTGCTTTGG
GTATCGGCGCTGCCGTGTGGATCACCCTGGCCACACTTCGTGCAGGCTATAACATCGTCAAGACCAACGAAGGCCTGAGT
CTTGCGCGCATGGGTCGCAGTCAGTTGGGCATGATCATCGCTCACCTGGGGATTGCGGTCTCGGTCGTGGGTGGCACCAT
GGTGTCCAACTACTCAATCGAGAAGAGTGTGCGTATGGGTCCGGGTATCAGCCATGAGCTGGCCGGTTATACCTTCAAGT
TTACTGAGACCAAAAACGTGGTAGGTCCGAACTACACCGCACAACAAGGTCAGATAGAGGTGTATAAGGGAGACAAGTTC
CTGACGCTCCTCAAGCCCGATCGTCGTCAGTACAACGTGCGCACCATGGACATGACCGAAGCCGGGATCGACTGGGGTCT
GTTCCGAGATCTGTATGTCACCATGGGTGACCCTATCAGTGCCACCGAGTACGCGGTGCGTTTGAACTACAAGCCATTCG
TTCGTTGGTTATGGTTCGGCGGTATCTTTATGATGGTGGGTGGTTTCTTTGCGGCCTCGGATAAACGTTACCGCGTAAAG
GCAGCGGCTTCCGACAAAGCTAAAGAAGCGACTAAAGGTAACCTGGCTACAGCCTGA

Upstream 100 bases:

>100_bases
AAAATGGCGCAAATTCGCAAAAACTAATGTGTGATTCATGTTGTGCGTCGATAGTAGTTGTCAGGCTGTCGACCCGGACT
AATAAGACTGAGGAGTACCC

Downstream 100 bases:

>100_bases
AAATTGGAGAAACGATGAAGAAGCTGGTCTTATTCATTCCATTGGTACTGTTTCTGGGGATGGGGATATTCCTCTACAAG
GGCTTGTTCCTGAATCCTCA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MIPELGHFALITGLAFALLLSCVPLIGVARKDQYLVRYAWPLAYGMFLFIALSVVTLAYSFAVDDFSVAYVAHHSNSQLP
SFFKIAAVWGGHEGSLLFWVFSLSVWAAAVAKFSKGLEEVFTARVLAVLGMITVGFTLFMLLTSSPFERLFPAPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALLSGRLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALVHSLIVTEKRGTFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPAKFELWSKETMLLVCNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIILV
MFVFMGIGPIIRWKKAKEGEVKRQLLIPAIVSAVVGIAVPFIAGGAFNAWVALGIGAAVWITLATLRAGYNIVKTNEGLS
LARMGRSQLGMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISHELAGYTFKFTETKNVVGPNYTAQQGQIEVYKGDKF
LTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISATEYAVRLNYKPFVRWLWFGGIFMMVGGFFAASDKRYRVK
AAASDKAKEATKGNLATA

Sequences:

>Translated_658_residues
MIPELGHFALITGLAFALLLSCVPLIGVARKDQYLVRYAWPLAYGMFLFIALSVVTLAYSFAVDDFSVAYVAHHSNSQLP
SFFKIAAVWGGHEGSLLFWVFSLSVWAAAVAKFSKGLEEVFTARVLAVLGMITVGFTLFMLLTSSPFERLFPAPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALLSGRLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALVHSLIVTEKRGTFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPAKFELWSKETMLLVCNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIILV
MFVFMGIGPIIRWKKAKEGEVKRQLLIPAIVSAVVGIAVPFIAGGAFNAWVALGIGAAVWITLATLRAGYNIVKTNEGLS
LARMGRSQLGMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISHELAGYTFKFTETKNVVGPNYTAQQGQIEVYKGDKF
LTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISATEYAVRLNYKPFVRWLWFGGIFMMVGGFFAASDKRYRVK
AAASDKAKEATKGNLATA
>Mature_658_residues
MIPELGHFALITGLAFALLLSCVPLIGVARKDQYLVRYAWPLAYGMFLFIALSVVTLAYSFAVDDFSVAYVAHHSNSQLP
SFFKIAAVWGGHEGSLLFWVFSLSVWAAAVAKFSKGLEEVFTARVLAVLGMITVGFTLFMLLTSSPFERLFPAPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALLSGRLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALVHSLIVTEKRGTFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPAKFELWSKETMLLVCNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIILV
MFVFMGIGPIIRWKKAKEGEVKRQLLIPAIVSAVVGIAVPFIAGGAFNAWVALGIGAAVWITLATLRAGYNIVKTNEGLS
LARMGRSQLGMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISHELAGYTFKFTETKNVVGPNYTAQQGQIEVYKGDKF
LTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISATEYAVRLNYKPFVRWLWFGGIFMMVGGFFAASDKRYRVK
AAASDKAKEATKGNLATA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=652, Percent_Identity=51.3803680981595, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI1790511, Length=584, Percent_Identity=39.041095890411, Blast_Score=341, Evalue=1e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72153; Mature: 72153

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFALITGLAFALLLSCVPLIGVARKDQYLVRYAWPLAYGMFLFIALSVVTLAYS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
FAVDDFSVAYVAHHSNSQLPSFFKIAAVWGGHEGSLLFWVFSLSVWAAAVAKFSKGLEEV
HHCCCCEEEEEEECCCCCCCHHHEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLGMITVGFTLFMLLTSSPFERLFPAPMEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFSVSFAFAIAALLSGRLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLIGTALVHSLIVTEKRGTFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPAKFELWSKETMLLVCNLLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHCCCCCCEEEECCCHHHHHHHHHHHHH
ACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIILVMFVFMGIGPIIRWKKAKEGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCH
VKRQLLIPAIVSAVVGIAVPFIAGGAFNAWVALGIGAAVWITLATLRAGYNIVKTNEGLS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCH
LARMGRSQLGMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISHELAGYTFKFTETKNV
HHHHCHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHCCCCCCCHHHCCEEEEEECCCCC
VGPNYTAQQGQIEVYKGDKFLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPIS
CCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCCC
ATEYAVRLNYKPFVRWLWFGGIFMMVGGFFAASDKRYRVKAAASDKAKEATKGNLATA
CCEEEEEECCHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MIPELGHFALITGLAFALLLSCVPLIGVARKDQYLVRYAWPLAYGMFLFIALSVVTLAYS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
FAVDDFSVAYVAHHSNSQLPSFFKIAAVWGGHEGSLLFWVFSLSVWAAAVAKFSKGLEEV
HHCCCCEEEEEEECCCCCCCHHHEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLGMITVGFTLFMLLTSSPFERLFPAPMEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFSVSFAFAIAALLSGRLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLIGTALVHSLIVTEKRGTFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPAKFELWSKETMLLVCNLLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHCCCCCCEEEECCCHHHHHHHHHHHHH
ACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIILVMFVFMGIGPIIRWKKAKEGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCH
VKRQLLIPAIVSAVVGIAVPFIAGGAFNAWVALGIGAAVWITLATLRAGYNIVKTNEGLS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCH
LARMGRSQLGMIIAHLGIAVSVVGGTMVSNYSIEKSVRMGPGISHELAGYTFKFTETKNV
HHHHCHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHCCCCCCCHHHCCEEEEEECCCCC
VGPNYTAQQGQIEVYKGDKFLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPIS
CCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCCC
ATEYAVRLNYKPFVRWLWFGGIFMMVGGFFAASDKRYRVKAAASDKAKEATKGNLATA
CCEEEEEECCHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]