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The map label for this gene is rmpR [H]

Identifier: 119716814

GI number: 119716814

Start: 2753307

End: 2754053

Strand: Reverse

Name: rmpR [H]

Synonym: Noca_2588

Alternate gene names: 119716814

Gene position: 2754053-2753307 (Counterclockwise)

Preceding gene: 119716819

Following gene: 119716813

Centisome position: 55.24

GC content: 74.3

Gene sequence:

>747_bases
ATGGTTGAGCCCGTGACTGCCTCCCCCGACGATCGCCTGCCTGTCGCGGTGCTGCGTCCGGTGCGCGGACACCACGCGTT
CGAGGCGTGCGTCGAGCAGCTGGCGACCGCGATCCGGCTGGGTGTCTACCCGCTCGGCGCGACGCTGCCCGCGGAGCGTG
ACCTCGCCGAGCAGCTGGCCGTCTCGCGCGCGACGCTCCGCGAGGCGATGGCGGCGCTGCGCGAGGCGGGGCTGGTCGAG
ACCAAGCGCGGGCGCGGAGGTGGCACCGTCGTCACCCTCAAGGCCCGCTCCCCCAGCGGCCGTCGGGCTGCGCGCCTCAC
CGCGACCCAACGCCGGGACTGGCTCGACGCGCTCGAGTTCCGGCGGATCGTCGAGCCGGGCGCGGCGTACCTCGCGGCCC
GCACCGACCTGGACGCGTCCGCACGCGACCGGCTGGAGGCTGCGCTCGCGGAGGTGACCGCCGCCAGGAAGCCCGCTGCG
CACCGCCAAGCGGACTCGCGGTTCCACCTGACGGTCGCGTCCCTGGCCGACTCGCCGCGAGTGGTCGAGGCCGTGACGTC
TGTGCAGGCCACCCTGCACGAGATGCTGCTGGCGATCCCGGTCCTGGGCAGGAACATCGCCCACTCGGACCGGCAGCACG
GTGCGCTGGTCAAGGCGATCCTCACGGGGGACGCCGATCGCGCCCGCCGAGTCATGGAAGAGCACTGCGACGACACGGCC
GCGCTCCTGCGCGGCCTCGTGGGATAG

Upstream 100 bases:

>100_bases
AACGGACGCTAGACCCGACCCGATCCGGGTGTAAATGGCCACCGGAAAATTGGTATGAACTCAGACCATTGCGCATTGAC
AGGTCGCCTGGGGGGCGTCG

Downstream 100 bases:

>100_bases
GGGAAGCGTTGGCCCAGAACGAGACCCAGGACGAGTCCGGGCTCCGCAACAGCCGGCACCTGACGATGCACCAGCTCGTC
GACCGCATCGAGAGCGGCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: DNA-binding regulatory protein rmpR [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MVEPVTASPDDRLPVAVLRPVRGHHAFEACVEQLATAIRLGVYPLGATLPAERDLAEQLAVSRATLREAMAALREAGLVE
TKRGRGGGTVVTLKARSPSGRRAARLTATQRRDWLDALEFRRIVEPGAAYLAARTDLDASARDRLEAALAEVTAARKPAA
HRQADSRFHLTVASLADSPRVVEAVTSVQATLHEMLLAIPVLGRNIAHSDRQHGALVKAILTGDADRARRVMEEHCDDTA
ALLRGLVG

Sequences:

>Translated_248_residues
MVEPVTASPDDRLPVAVLRPVRGHHAFEACVEQLATAIRLGVYPLGATLPAERDLAEQLAVSRATLREAMAALREAGLVE
TKRGRGGGTVVTLKARSPSGRRAARLTATQRRDWLDALEFRRIVEPGAAYLAARTDLDASARDRLEAALAEVTAARKPAA
HRQADSRFHLTVASLADSPRVVEAVTSVQATLHEMLLAIPVLGRNIAHSDRQHGALVKAILTGDADRARRVMEEHCDDTA
ALLRGLVG
>Mature_248_residues
MVEPVTASPDDRLPVAVLRPVRGHHAFEACVEQLATAIRLGVYPLGATLPAERDLAEQLAVSRATLREAMAALREAGLVE
TKRGRGGGTVVTLKARSPSGRRAARLTATQRRDWLDALEFRRIVEPGAAYLAARTDLDASARDRLEAALAEVTAARKPAA
HRQADSRFHLTVASLADSPRVVEAVTSVQATLHEMLLAIPVLGRNIAHSDRQHGALVKAILTGDADRARRVMEEHCDDTA
ALLRGLVG

Specific function: May regulate the transcription of the rmpAB operon (Potential) [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=203, Percent_Identity=33.9901477832512, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789353, Length=220, Percent_Identity=29.0909090909091, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26654; Mature: 26654

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEPVTASPDDRLPVAVLRPVRGHHAFEACVEQLATAIRLGVYPLGATLPAERDLAEQLA
CCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
VSRATLREAMAALREAGLVETKRGRGGGTVVTLKARSPSGRRAARLTATQRRDWLDALEF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
RRIVEPGAAYLAARTDLDASARDRLEAALAEVTAARKPAAHRQADSRFHLTVASLADSPR
HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEHHHHCCCCH
VVEAVTSVQATLHEMLLAIPVLGRNIAHSDRQHGALVKAILTGDADRARRVMEEHCDDTA
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
ALLRGLVG
HHHHHHCC
>Mature Secondary Structure
MVEPVTASPDDRLPVAVLRPVRGHHAFEACVEQLATAIRLGVYPLGATLPAERDLAEQLA
CCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
VSRATLREAMAALREAGLVETKRGRGGGTVVTLKARSPSGRRAARLTATQRRDWLDALEF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
RRIVEPGAAYLAARTDLDASARDRLEAALAEVTAARKPAAHRQADSRFHLTVASLADSPR
HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEHHHHCCCCH
VVEAVTSVQATLHEMLLAIPVLGRNIAHSDRQHGALVKAILTGDADRARRVMEEHCDDTA
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
ALLRGLVG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10648518 [H]