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The map label for this gene is xerC [H]

Identifier: 119716492

GI number: 119716492

Start: 2417387

End: 2418622

Strand: Reverse

Name: xerC [H]

Synonym: Noca_2265

Alternate gene names: 119716492

Gene position: 2418622-2417387 (Counterclockwise)

Preceding gene: 119716496

Following gene: 119716491

Centisome position: 48.51

GC content: 68.85

Gene sequence:

>1236_bases
TTGTCGCGTGATCTCGAACAACTGCAGATTGAGCGCTTGGGTTGCGTTCGCTCCGGTGGCTCCGGTGTTGCCTGGCTGGT
CTACGACGACGCGGGCGATGCGGTTCGCCCGATCGCGGAGTTCCTCCGGGACTTCGCAGCGCGGGGCAATAGTCGGGGCA
GCGTGCGGTCCTATGCCTATGGGCTGCTTCGGTGGTGGCGCTGGCTCGCGGCGGTCGGCGTGGAGTGGGACCGAGCCACC
CAAGCAGAAGTACGTGACCTGACATTGTGGCTGCAGTTGCATCCTAAGCCGCGCCGGTCACAGCGGACCGTCTCAGCAGC
GACAGCCGGGACGGTGAACCAGGTGACCGGCAAGCGCTACCTGGACGACCACTACGCGGCACGTACGATCCGGCACAGCA
ACGCGGTGGTCTCCTCGTTCTACGAGTTCTGGGGCGAGCAGGGGTTGGGTCCGGTGGTGAACCCGGTGGCGCGCGACCAT
CGCGGCCAGGGACGTTCGAACGCGCATCACAACCCGATGGAGCGGTTCCGTCCCGAGGGTCGGGTCCGGCACAACCCGAA
GGTCCCGCGGCGTCAGCCGCGGGCGCTGCCGGACCAAGCCTGGGCAAATCTGTTCGACGCGATGGGCTCGAACCGGGACC
GTGCGCTGCTGGCGTTGGCAATCAGCAACGGCGCCCGCGCGGCGGAGGTCCTCGGCCTGCGCGGCTGCGACGTGGACTGG
GGCAACCAGCAGGTCCGGGTGATCCGCAAGGGCAGCCGTGCCGAGCAGTGGCTGCCGGGCAGCAACGACGCGTTCGTGTG
GCTGCGGCTCTATCTGGCCGAGATCGGTGGCGTCGGCCCGGCTGACCCGCTGTGGGTGACGCTGCGCAGACGACGTGACG
CCGACGGCAAGTTGGCCCGGATCCCGTTGAGCTACGAGGCGCTTCGGGCGGTGCTGCGCCGCGCAAACGCGAAGCTGGGC
ACCAACTGGAGCATGCACGACCTGCGCCACACCTGCGCGTTGCGGATGGCCGCCGACGAGCACGTCTCGCTGCGCGACGT
CCAGACGATCCTGGGCCATGCCCACCTGGAAACGACCGCGGAGATCTATCTCGTCGAGGACGAGCGCCACACCGTGGAGC
GGGTCGCCGAACACCTGGCCCGTCTGGCCAAGCCGAAGCCAGCCCCGGAGCCTGTCGACCGCGGCTACCGGGCCGCCGAC
CTGGCGGTGCTGTTCGGTGACGGGGTACTGCCTTGA

Upstream 100 bases:

>100_bases
CGAGGACGATCGACTCCTCAGGCCATGTTGACCGGACTACCAGCGGGGGCCGGCTGATAGATGTATGCGCCCATGATGGT
CGTCGTACGGGAGTCCTGGC

Downstream 100 bases:

>100_bases
GGAGCGTGTTGACCAGCGAGCAGCTGAAGGTCGCCGGGCCGTACTACCGCGAGCATCCCGAGCTGGTGGACCAGGTCTTC
GCCGGGCCACACGACACCGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSRDLEQLQIERLGCVRSGGSGVAWLVYDDAGDAVRPIAEFLRDFAARGNSRGSVRSYAYGLLRWWRWLAAVGVEWDRAT
QAEVRDLTLWLQLHPKPRRSQRTVSAATAGTVNQVTGKRYLDDHYAARTIRHSNAVVSSFYEFWGEQGLGPVVNPVARDH
RGQGRSNAHHNPMERFRPEGRVRHNPKVPRRQPRALPDQAWANLFDAMGSNRDRALLALAISNGARAAEVLGLRGCDVDW
GNQQVRVIRKGSRAEQWLPGSNDAFVWLRLYLAEIGGVGPADPLWVTLRRRRDADGKLARIPLSYEALRAVLRRANAKLG
TNWSMHDLRHTCALRMAADEHVSLRDVQTILGHAHLETTAEIYLVEDERHTVERVAEHLARLAKPKPAPEPVDRGYRAAD
LAVLFGDGVLP

Sequences:

>Translated_411_residues
MSRDLEQLQIERLGCVRSGGSGVAWLVYDDAGDAVRPIAEFLRDFAARGNSRGSVRSYAYGLLRWWRWLAAVGVEWDRAT
QAEVRDLTLWLQLHPKPRRSQRTVSAATAGTVNQVTGKRYLDDHYAARTIRHSNAVVSSFYEFWGEQGLGPVVNPVARDH
RGQGRSNAHHNPMERFRPEGRVRHNPKVPRRQPRALPDQAWANLFDAMGSNRDRALLALAISNGARAAEVLGLRGCDVDW
GNQQVRVIRKGSRAEQWLPGSNDAFVWLRLYLAEIGGVGPADPLWVTLRRRRDADGKLARIPLSYEALRAVLRRANAKLG
TNWSMHDLRHTCALRMAADEHVSLRDVQTILGHAHLETTAEIYLVEDERHTVERVAEHLARLAKPKPAPEPVDRGYRAAD
LAVLFGDGVLP
>Mature_410_residues
SRDLEQLQIERLGCVRSGGSGVAWLVYDDAGDAVRPIAEFLRDFAARGNSRGSVRSYAYGLLRWWRWLAAVGVEWDRATQ
AEVRDLTLWLQLHPKPRRSQRTVSAATAGTVNQVTGKRYLDDHYAARTIRHSNAVVSSFYEFWGEQGLGPVVNPVARDHR
GQGRSNAHHNPMERFRPEGRVRHNPKVPRRQPRALPDQAWANLFDAMGSNRDRALLALAISNGARAAEVLGLRGCDVDWG
NQQVRVIRKGSRAEQWLPGSNDAFVWLRLYLAEIGGVGPADPLWVTLRRRRDADGKLARIPLSYEALRAVLRRANAKLGT
NWSMHDLRHTCALRMAADEHVSLRDVQTILGHAHLETTAEIYLVEDERHTVERVAEHLARLAKPKPAPEPVDRGYRAADL
AVLFGDGVLP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=202, Percent_Identity=31.1881188118812, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46151; Mature: 46020

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDLEQLQIERLGCVRSGGSGVAWLVYDDAGDAVRPIAEFLRDFAARGNSRGSVRSYAY
CCCCHHHHHHHHHHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
GLLRWWRWLAAVGVEWDRATQAEVRDLTLWLQLHPKPRRSQRTVSAATAGTVNQVTGKRY
HHHHHHHHHHHHCCCCCCCCHHHHHEEEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCHH
LDDHYAARTIRHSNAVVSSFYEFWGEQGLGPVVNPVARDHRGQGRSNAHHNPMERFRPEG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
RVRHNPKVPRRQPRALPDQAWANLFDAMGSNRDRALLALAISNGARAAEVLGLRGCDVDW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCC
GNQQVRVIRKGSRAEQWLPGSNDAFVWLRLYLAEIGGVGPADPLWVTLRRRRDADGKLAR
CCCEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCEEE
IPLSYEALRAVLRRANAKLGTNWSMHDLRHTCALRMAADEHVSLRDVQTILGHAHLETTA
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCE
EIYLVEDERHTVERVAEHLARLAKPKPAPEPVDRGYRAADLAVLFGDGVLP
EEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHEEEEECCCCCC
>Mature Secondary Structure 
SRDLEQLQIERLGCVRSGGSGVAWLVYDDAGDAVRPIAEFLRDFAARGNSRGSVRSYAY
CCCHHHHHHHHHHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
GLLRWWRWLAAVGVEWDRATQAEVRDLTLWLQLHPKPRRSQRTVSAATAGTVNQVTGKRY
HHHHHHHHHHHHCCCCCCCCHHHHHEEEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCHH
LDDHYAARTIRHSNAVVSSFYEFWGEQGLGPVVNPVARDHRGQGRSNAHHNPMERFRPEG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
RVRHNPKVPRRQPRALPDQAWANLFDAMGSNRDRALLALAISNGARAAEVLGLRGCDVDW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCC
GNQQVRVIRKGSRAEQWLPGSNDAFVWLRLYLAEIGGVGPADPLWVTLRRRRDADGKLAR
CCCEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCEEE
IPLSYEALRAVLRRANAKLGTNWSMHDLRHTCALRMAADEHVSLRDVQTILGHAHLETTA
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCE
EIYLVEDERHTVERVAEHLARLAKPKPAPEPVDRGYRAADLAVLFGDGVLP
EEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]