| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716485
Identifier: 119716485
GI number: 119716485
Start: 2409187
End: 2410191
Strand: Reverse
Name: 119716485
Synonym: Noca_2258
Alternate gene names: NA
Gene position: 2410191-2409187 (Counterclockwise)
Preceding gene: 119716486
Following gene: 119716484
Centisome position: 48.34
GC content: 72.44
Gene sequence:
>1005_bases ATGGCCCACGAGATCGAGACCCACGGCACGCAGGCAGCAGCCGTCTTCGCCCGCAAGGACGCCTGGCACCGCCTGGGCAC CACCGTCCGCGACCGCGCGTTCACCGCCGAGGAGGCCATGCGGCTCGGCCACCTGGGCGGCTGGTACGTCCGCAAGTTGC CGCTCACCACCGCCGAGGTCAGCGAGGTCGGCGTCACCGCGATCGAGGTCCCCGGCTTCGCCACGGTGCGCACCAACCCG TTCACCGGGGCACCCGAGGCGCTCGGCGTCGTCGGCGGCGGCTACACCCCGCTGCAGAACGAGGACCACGCCGAGTTCCT GAACCTGCTGGCCGAGGAGTCGGGCGCGATCTTCGACACCGCCGGTTCGCTGCGCGGCGGTCGGCAGGTGTTCATCACCA TGCAGCTGCCGGACTCGCTCACGGTCGGCGGCACCGACCGCGTCGACCTGAACATCGCGGCGCTCAACAGTCACGACGGC TCCAGCGCGTTCCGCATCCTCGTCACCCCGGTCCGCGTCGTGTGCGCGAACACCCAGAGCGCGGCCCTGCGCAACCACGA GTCGTCGTTCTCGATCCGGCACACCCGCAACGCCAAGGCCGCCGTCCAGGCCGCCCGCGACGCGCTCGGGCTGACGTTCA CCTACGTCGACGCGTTCCAGGTCGAGGCCGAGCGGCTGATCCAGCAGACCATGACCGACGCTGCGTTCGACGCCCTGATC GACGCCACGTTCGGCAAGGCCGAGGCCAACGGCACCAAGCGGGTCCGCGAGACCGAGCGCCGCCGCCGCTCCCGGCTGCA CTGGCTGTTCGCCGACGCCGACACGCAGGCCGGCATCCGCGCCACGGCGTGGGCCGGCTACCAGGCCGTGGCCGAGTACG TCGACCACTACGCCCCGGTCCGCACCAAGGGCGACGAGCACGCCGCCCGGGCCACGCGGGTGCTCACCAGCGACGACCCC GACCGGATCAAGCGACGCGCCTGGACCGCGCTCGCTCCGGCCTGA
Upstream 100 bases:
>100_bases CACCTGAGGGCGGTTCTCCCTGTGGAGAACCGTCCTCAGTGGAATAGAAACCATAGACTGAACTCAGTTCGTTTGATTCC GACACCGGGAGGACCCCGAC
Downstream 100 bases:
>100_bases CCGTCCCGCCAGTTCCTCCGGTGGCGGGCTGAGACCCCGAGTCCGGCCCCCCACCGGCCCAACTGAAGGAGGAGCCATGA CCGACACGACCACCCACGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Phage/Plasmid-Related Protein Tigr; Phage/Plasmid-Like Protein; Prophage Protein; Phage/Plasmid-Like Protein TIGR
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MAHEIETHGTQAAAVFARKDAWHRLGTTVRDRAFTAEEAMRLGHLGGWYVRKLPLTTAEVSEVGVTAIEVPGFATVRTNP FTGAPEALGVVGGGYTPLQNEDHAEFLNLLAEESGAIFDTAGSLRGGRQVFITMQLPDSLTVGGTDRVDLNIAALNSHDG SSAFRILVTPVRVVCANTQSAALRNHESSFSIRHTRNAKAAVQAARDALGLTFTYVDAFQVEAERLIQQTMTDAAFDALI DATFGKAEANGTKRVRETERRRRSRLHWLFADADTQAGIRATAWAGYQAVAEYVDHYAPVRTKGDEHAARATRVLTSDDP DRIKRRAWTALAPA
Sequences:
>Translated_334_residues MAHEIETHGTQAAAVFARKDAWHRLGTTVRDRAFTAEEAMRLGHLGGWYVRKLPLTTAEVSEVGVTAIEVPGFATVRTNP FTGAPEALGVVGGGYTPLQNEDHAEFLNLLAEESGAIFDTAGSLRGGRQVFITMQLPDSLTVGGTDRVDLNIAALNSHDG SSAFRILVTPVRVVCANTQSAALRNHESSFSIRHTRNAKAAVQAARDALGLTFTYVDAFQVEAERLIQQTMTDAAFDALI DATFGKAEANGTKRVRETERRRRSRLHWLFADADTQAGIRATAWAGYQAVAEYVDHYAPVRTKGDEHAARATRVLTSDDP DRIKRRAWTALAPA >Mature_333_residues AHEIETHGTQAAAVFARKDAWHRLGTTVRDRAFTAEEAMRLGHLGGWYVRKLPLTTAEVSEVGVTAIEVPGFATVRTNPF TGAPEALGVVGGGYTPLQNEDHAEFLNLLAEESGAIFDTAGSLRGGRQVFITMQLPDSLTVGGTDRVDLNIAALNSHDGS SAFRILVTPVRVVCANTQSAALRNHESSFSIRHTRNAKAAVQAARDALGLTFTYVDAFQVEAERLIQQTMTDAAFDALID ATFGKAEANGTKRVRETERRRRSRLHWLFADADTQAGIRATAWAGYQAVAEYVDHYAPVRTKGDEHAARATRVLTSDDPD RIKRRAWTALAPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36340; Mature: 36209
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHEIETHGTQAAAVFARKDAWHRLGTTVRDRAFTAEEAMRLGHLGGWYVRKLPLTTAEV CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH SEVGVTAIEVPGFATVRTNPFTGAPEALGVVGGGYTPLQNEDHAEFLNLLAEESGAIFDT HHCCCEEEECCCEEEEECCCCCCCCHHHEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEC AGSLRGGRQVFITMQLPDSLTVGGTDRVDLNIAALNSHDGSSAFRILVTPVRVVCANTQS CCCCCCCCEEEEEEECCCCEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCHH AALRNHESSFSIRHTRNAKAAVQAARDALGLTFTYVDAFQVEAERLIQQTMTDAAFDALI HHHHCCCCCEEEEECCCHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH DATFGKAEANGTKRVRETERRRRSRLHWLFADADTQAGIRATAWAGYQAVAEYVDHYAPV HHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCC RTKGDEHAARATRVLTSDDPDRIKRRAWTALAPA CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure AHEIETHGTQAAAVFARKDAWHRLGTTVRDRAFTAEEAMRLGHLGGWYVRKLPLTTAEV CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH SEVGVTAIEVPGFATVRTNPFTGAPEALGVVGGGYTPLQNEDHAEFLNLLAEESGAIFDT HHCCCEEEECCCEEEEECCCCCCCCHHHEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEC AGSLRGGRQVFITMQLPDSLTVGGTDRVDLNIAALNSHDGSSAFRILVTPVRVVCANTQS CCCCCCCCEEEEEEECCCCEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCHH AALRNHESSFSIRHTRNAKAAVQAARDALGLTFTYVDAFQVEAERLIQQTMTDAAFDALI HHHHCCCCCEEEEECCCHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH DATFGKAEANGTKRVRETERRRRSRLHWLFADADTQAGIRATAWAGYQAVAEYVDHYAPV HHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCC RTKGDEHAARATRVLTSDDPDRIKRRAWTALAPA CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA