| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119715387
Identifier: 119715387
GI number: 119715387
Start: 1219149
End: 1222109
Strand: Direct
Name: 119715387
Synonym: Noca_1149
Alternate gene names: NA
Gene position: 1219149-1222109 (Clockwise)
Preceding gene: 119715386
Following gene: 119715389
Centisome position: 24.45
GC content: 69.4
Gene sequence:
>2961_bases ATGAGTCGCATCGGGATCAAGAGCGGCCTGGCCGTCACAGCCGTGACGGGACTGGCCTTGGCTGGACTGCCGCTGCTCGC GTCTCCGGCGTCGGCCAACCCTTTGTCGAACGGCATCGATCCCGACGCCGTGACGTTCTACAGCCAGTACGCGACCGGTG TCTCGGCCGAGAACGACGGCTCGAACTCCACGATCTCCCTCGTGGTCGGCGGCGGCTCGAACGTCAACTCGGTCCAGTTC CGGGCCACGCTGACTCCCGGCGGCACACCCATCAACATCGGAAGCCCGGTCGCCCGGAACGCCGACGGCGTGTTCGCCTT CGACTGGACCCCGAGCTTCCCGGCCGGGACCACGGCGGTGGAGTTCTCCGCGATCCCCAACACCGGCGTCGTCAACACCG TGACCAGCGGGGCCAAGATGGTGCTGAGCGACGGGATCGCGAACACCGTCGAGCTGAGCAGCGAGGGCAGTCTCGGAGTC TTCCAGAGCCCCTACGCCGCGGACTCCGGTGGCGACTATGTCGGTGTCTCCGGCACCACCTCTGACGCCGGCAACGTCGA GCTGAGCACGCGCAGCGCCAACCCATCGACGCCCGCAGGCACGGCCACCGCGTCGTCGACCGTCACTGCTCCGGCTACCG ATGGCGCGTTCTCGGGTGTGCTGAACATCGACGGCTACACCTACTCCGGGGGTGCCGAGCCGAACCAGATCGCGCTCGGG GCGGCCACCCAGGGGGCGGGCGCCACCGATGACGTGGAGGCGTCGACGCTCTACGTGCAACACATCTCCACCGTGTCGAC GACGGCCTCGCGCACCAACGTGCCGACCGGCGAGACGGCCGACGTCACCGTGACCGTGAAGGACCAGAGCGGCAAGCCGG TCGCGAACGCCCTGGTGGACTTCAACACGCCGGACGGCAGTGATCCCGACAGCCTGCCCGACGATTCGTCCACTGCCGCG GAACGCACCGACGCTCGCGGCGTGGTCACCTTCGAGAGCCTCGGGGCCGGCAGCTACACGTTCTACGCCAACACCACCTC CGAGGTGGACACCCAGAGTGCCGGCGATGTCGCGTCCGCGCCGGTGACGATCACCGAGTACACGCCGACGAACACCGCGC TGGTGGCCTCGACCGTGGACGGCTACCGCGACTTCGATCTCGATGAGGTGAGCGGCGCGGAGAACGGGGACGACTTCGTC GCCACCTTGAAGGACCAGCACGGTGAGCCGATCGCCGGCGAGCCGATCGAGTACAACTGGCACTTCGTGCCCGGTGGCGG TGGGACGCCGACCGACGGTGGGTTCACCAGCGCCGGCACCACCGATGCGAAGGGTCAGGTCGCCGTGCCCTTCCCGACCT GGGGAACCGCCGGCACCTACACGCTGAGCGTGCGGCGCCCGAACGTCAACGGGTCGGGGCTGCTCAACGGCACCCCTGTG ACGGTCGACGTCGCGGAGTCCGAGGTCACGTTCGCCGATGGCGACGCCGTGGGCGCCCCGGTCAACGGATCGGTCACGAT CGAGGGGACCCTCGCGCTGGTGGACGGATCCGGGCCATTGGGCGGGCGTACGGTCACCGTGAGCTACAACCCCGGGGTCG GTGGAGACGCCTCGTTCTCGACCGACCAGCCTGCCGGGACCAAGCGCGACAGCGCCGTCCAGGCGACCGCGGTCACCGCG GCGGACGGCTCGTTCGCGGTCTCGCTCACGGACCCCTCGCCGCCGCCGAACGTGCCGACGACGGACGAGAGCGGCACCCT CACGGCAGTGGCTGACGGCCTGAACACCGGCGACACCACCCCCGGCCCCGCCGACGCGACCGACAGCATCTCGGTCACCT TCCGCGAGACCCCCACGGTGAGCGGGATCGACATCGGGACACAGGTGCTCGCCCCGAGCGGAACGGGGATCACCGCCGCT GGCCCGGGTGTGCCCATCGACCTCGACATCACGGTGCGTGGTGCGGACGGGGACGACAACCCGAGCAACGACCCGAAGCT CGGCGACGTCCCGGTCCAGGTGAGCGTCGACAAGGGGTTCCTGAGCCCCAACGCCGAGTCCACCGACGACCTCACCCTCG CGTCCGGCCACGACAGCCAGGGCGACCTGTGGGGGTACTTCCAGAACGACGGCGCCGACGAGACCGTGACGACCGCGGAC TCGGGCAGCGCGCTCGGCACCACGGGGCTGGTCGCCGCCATCGAGAAGGACGCCGGCTTCGACGACGACGGTCTCACCCA GCTGACGGTGACCGTGAAGGCGGGCGACGTCACGCAGAAGAAGACGATCACCTACGACGTCAGGGCGCTGCTGAACGCCG GGGACTCCTCGTTCGAGCGGGCCCAGGGCGAGCCGACGGGTCCGGTGCCCACCGGACAGCGAGTGGACTTCCAGCTCTAC GTCCACGACCAGTTCGGCAACCTGGCCGGCGACGAGGACGCGCGGGTGACCGACGACTCCCCGATCGCCGACTTCGACAC CGACGAGGCCCAGGACAAGACGCTGTCCGACTTCGTCAACTCCGGTCCCGGGGTGACTGCGTTCTCCGACGCACCGACCA CGCAGATGCTCAAGGCGACGATGACGCCCGGTGAGGTGCTCGTCGACGCGGCTGGCAACGCCGCCGCCAACAGCAAGATT GTGGCCGTGGAGTCCGACCCGATCATCTGGGTCAAGCCGCCGGCCCCGATCGTGGCCAGGCTCTCCGGCCTCAGCAACGG TGGGCGCGCGGACCGGCTGACGGTCAACGCGCCCGCCGCCGCGGCGGGAGCGAAGGTCAAGCTCTACAAGGTCAAGCGCG GTAAGCGGACCCTCATCGCGACCGGTGAGCTCAACGCCAACGGCAAGGTGACCTTCCGGGTCAGGGACCGCAACGGCGAG CGCTTCACGAAGTACGTCGCCCGCGTGATGGCGACGGACACGACAAAGGGCGACACGACGAACAAGCGGAGGATCCGTTG A
Upstream 100 bases:
>100_bases CCCGTGCACCGGCCAAGGCCGATGATCGTGGGCTGCCCCGAGTCGGCGTGTCCACGTGCGCGTGCGGGAGCGTCCCGGCG CGACCTCCAGGAGGAAACAG
Downstream 100 bases:
>100_bases TCGTCTAGCACCACCCCGACGGCACGGGTTCGCGGTGAGCGCCACCGTGGGCCCGTGCCGTCCTCGTCCTCGGGCTCGGG CCGCGGTTCAGCCCTGGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 986; Mature: 985
Protein sequence:
>986_residues MSRIGIKSGLAVTAVTGLALAGLPLLASPASANPLSNGIDPDAVTFYSQYATGVSAENDGSNSTISLVVGGGSNVNSVQF RATLTPGGTPINIGSPVARNADGVFAFDWTPSFPAGTTAVEFSAIPNTGVVNTVTSGAKMVLSDGIANTVELSSEGSLGV FQSPYAADSGGDYVGVSGTTSDAGNVELSTRSANPSTPAGTATASSTVTAPATDGAFSGVLNIDGYTYSGGAEPNQIALG AATQGAGATDDVEASTLYVQHISTVSTTASRTNVPTGETADVTVTVKDQSGKPVANALVDFNTPDGSDPDSLPDDSSTAA ERTDARGVVTFESLGAGSYTFYANTTSEVDTQSAGDVASAPVTITEYTPTNTALVASTVDGYRDFDLDEVSGAENGDDFV ATLKDQHGEPIAGEPIEYNWHFVPGGGGTPTDGGFTSAGTTDAKGQVAVPFPTWGTAGTYTLSVRRPNVNGSGLLNGTPV TVDVAESEVTFADGDAVGAPVNGSVTIEGTLALVDGSGPLGGRTVTVSYNPGVGGDASFSTDQPAGTKRDSAVQATAVTA ADGSFAVSLTDPSPPPNVPTTDESGTLTAVADGLNTGDTTPGPADATDSISVTFRETPTVSGIDIGTQVLAPSGTGITAA GPGVPIDLDITVRGADGDDNPSNDPKLGDVPVQVSVDKGFLSPNAESTDDLTLASGHDSQGDLWGYFQNDGADETVTTAD SGSALGTTGLVAAIEKDAGFDDDGLTQLTVTVKAGDVTQKKTITYDVRALLNAGDSSFERAQGEPTGPVPTGQRVDFQLY VHDQFGNLAGDEDARVTDDSPIADFDTDEAQDKTLSDFVNSGPGVTAFSDAPTTQMLKATMTPGEVLVDAAGNAAANSKI VAVESDPIIWVKPPAPIVARLSGLSNGGRADRLTVNAPAAAAGAKVKLYKVKRGKRTLIATGELNANGKVTFRVRDRNGE RFTKYVARVMATDTTKGDTTNKRRIR
Sequences:
>Translated_986_residues MSRIGIKSGLAVTAVTGLALAGLPLLASPASANPLSNGIDPDAVTFYSQYATGVSAENDGSNSTISLVVGGGSNVNSVQF RATLTPGGTPINIGSPVARNADGVFAFDWTPSFPAGTTAVEFSAIPNTGVVNTVTSGAKMVLSDGIANTVELSSEGSLGV FQSPYAADSGGDYVGVSGTTSDAGNVELSTRSANPSTPAGTATASSTVTAPATDGAFSGVLNIDGYTYSGGAEPNQIALG AATQGAGATDDVEASTLYVQHISTVSTTASRTNVPTGETADVTVTVKDQSGKPVANALVDFNTPDGSDPDSLPDDSSTAA ERTDARGVVTFESLGAGSYTFYANTTSEVDTQSAGDVASAPVTITEYTPTNTALVASTVDGYRDFDLDEVSGAENGDDFV ATLKDQHGEPIAGEPIEYNWHFVPGGGGTPTDGGFTSAGTTDAKGQVAVPFPTWGTAGTYTLSVRRPNVNGSGLLNGTPV TVDVAESEVTFADGDAVGAPVNGSVTIEGTLALVDGSGPLGGRTVTVSYNPGVGGDASFSTDQPAGTKRDSAVQATAVTA ADGSFAVSLTDPSPPPNVPTTDESGTLTAVADGLNTGDTTPGPADATDSISVTFRETPTVSGIDIGTQVLAPSGTGITAA GPGVPIDLDITVRGADGDDNPSNDPKLGDVPVQVSVDKGFLSPNAESTDDLTLASGHDSQGDLWGYFQNDGADETVTTAD SGSALGTTGLVAAIEKDAGFDDDGLTQLTVTVKAGDVTQKKTITYDVRALLNAGDSSFERAQGEPTGPVPTGQRVDFQLY VHDQFGNLAGDEDARVTDDSPIADFDTDEAQDKTLSDFVNSGPGVTAFSDAPTTQMLKATMTPGEVLVDAAGNAAANSKI VAVESDPIIWVKPPAPIVARLSGLSNGGRADRLTVNAPAAAAGAKVKLYKVKRGKRTLIATGELNANGKVTFRVRDRNGE RFTKYVARVMATDTTKGDTTNKRRIR >Mature_985_residues SRIGIKSGLAVTAVTGLALAGLPLLASPASANPLSNGIDPDAVTFYSQYATGVSAENDGSNSTISLVVGGGSNVNSVQFR ATLTPGGTPINIGSPVARNADGVFAFDWTPSFPAGTTAVEFSAIPNTGVVNTVTSGAKMVLSDGIANTVELSSEGSLGVF QSPYAADSGGDYVGVSGTTSDAGNVELSTRSANPSTPAGTATASSTVTAPATDGAFSGVLNIDGYTYSGGAEPNQIALGA ATQGAGATDDVEASTLYVQHISTVSTTASRTNVPTGETADVTVTVKDQSGKPVANALVDFNTPDGSDPDSLPDDSSTAAE RTDARGVVTFESLGAGSYTFYANTTSEVDTQSAGDVASAPVTITEYTPTNTALVASTVDGYRDFDLDEVSGAENGDDFVA TLKDQHGEPIAGEPIEYNWHFVPGGGGTPTDGGFTSAGTTDAKGQVAVPFPTWGTAGTYTLSVRRPNVNGSGLLNGTPVT VDVAESEVTFADGDAVGAPVNGSVTIEGTLALVDGSGPLGGRTVTVSYNPGVGGDASFSTDQPAGTKRDSAVQATAVTAA DGSFAVSLTDPSPPPNVPTTDESGTLTAVADGLNTGDTTPGPADATDSISVTFRETPTVSGIDIGTQVLAPSGTGITAAG PGVPIDLDITVRGADGDDNPSNDPKLGDVPVQVSVDKGFLSPNAESTDDLTLASGHDSQGDLWGYFQNDGADETVTTADS GSALGTTGLVAAIEKDAGFDDDGLTQLTVTVKAGDVTQKKTITYDVRALLNAGDSSFERAQGEPTGPVPTGQRVDFQLYV HDQFGNLAGDEDARVTDDSPIADFDTDEAQDKTLSDFVNSGPGVTAFSDAPTTQMLKATMTPGEVLVDAAGNAAANSKIV AVESDPIIWVKPPAPIVARLSGLSNGGRADRLTVNAPAAAAGAKVKLYKVKRGKRTLIATGELNANGKVTFRVRDRNGER FTKYVARVMATDTTKGDTTNKRRIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99739; Mature: 99608
Theoretical pI: Translated: 3.98; Mature: 3.98
Prosite motif: PS51127 BIG1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIGIKSGLAVTAVTGLALAGLPLLASPASANPLSNGIDPDAVTFYSQYATGVSAENDG CCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC SNSTISLVVGGGSNVNSVQFRATLTPGGTPINIGSPVARNADGVFAFDWTPSFPAGTTAV CCCEEEEEECCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEE EFSAIPNTGVVNTVTSGAKMVLSDGIANTVELSSEGSLGVFQSPYAADSGGDYVGVSGTT EEEECCCCCEEEECCCCCEEEEECCCCCEEEECCCCCCCEECCCCCCCCCCCEEEECCCC SDAGNVELSTRSANPSTPAGTATASSTVTAPATDGAFSGVLNIDGYTYSGGAEPNQIALG CCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCEEECCCCCCCEEEEE AATQGAGATDDVEASTLYVQHISTVSTTASRTNVPTGETADVTVTVKDQSGKPVANALVD ECCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHEEEE FNTPDGSDPDSLPDDSSTAAERTDARGVVTFESLGAGSYTFYANTTSEVDTQSAGDVASA CCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC PVTITEYTPTNTALVASTVDGYRDFDLDEVSGAENGDDFVATLKDQHGEPIAGEPIEYNW CEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCCCCEEEEEHHCCCCCCCCCCEEEEE HFVPGGGGTPTDGGFTSAGTTDAKGQVAVPFPTWGTAGTYTLSVRRPNVNGSGLLNGTPV EEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCEEECCCCE TVDVAESEVTFADGDAVGAPVNGSVTIEGTLALVDGSGPLGGRTVTVSYNPGVGGDASFS EEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCC TDQPAGTKRDSAVQATAVTAADGSFAVSLTDPSPPPNVPTTDESGTLTAVADGLNTGDTT CCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCC PGPADATDSISVTFRETPTVSGIDIGTQVLAPSGTGITAAGPGVPIDLDITVRGADGDDN CCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEEEEEECCCCCCC PSNDPKLGDVPVQVSVDKGFLSPNAESTDDLTLASGHDSQGDLWGYFQNDGADETVTTAD CCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECC SGSALGTTGLVAAIEKDAGFDDDGLTQLTVTVKAGDVTQKKTITYDVRALLNAGDSSFER CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEHHHHCCCCCHHHH AQGEPTGPVPTGQRVDFQLYVHDQFGNLAGDEDARVTDDSPIADFDTDEAQDKTLSDFVN HCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHH SGPGVTAFSDAPTTQMLKATMTPGEVLVDAAGNAAANSKIVAVESDPIIWVKPPAPIVAR CCCCEEEECCCCCHHHEEEECCCCEEEEECCCCCCCCCEEEEEECCCEEEECCCCCHHHH LSGLSNGGRADRLTVNAPAAAAGAKVKLYKVKRGKRTLIATGELNANGKVTFRVRDRNGE HHCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCH RFTKYVARVMATDTTKGDTTNKRRIR HHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure SRIGIKSGLAVTAVTGLALAGLPLLASPASANPLSNGIDPDAVTFYSQYATGVSAENDG CCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC SNSTISLVVGGGSNVNSVQFRATLTPGGTPINIGSPVARNADGVFAFDWTPSFPAGTTAV CCCEEEEEECCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEE EFSAIPNTGVVNTVTSGAKMVLSDGIANTVELSSEGSLGVFQSPYAADSGGDYVGVSGTT EEEECCCCCEEEECCCCCEEEEECCCCCEEEECCCCCCCEECCCCCCCCCCCEEEECCCC SDAGNVELSTRSANPSTPAGTATASSTVTAPATDGAFSGVLNIDGYTYSGGAEPNQIALG CCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCEEECCCCCCCEEEEE AATQGAGATDDVEASTLYVQHISTVSTTASRTNVPTGETADVTVTVKDQSGKPVANALVD ECCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHEEEE FNTPDGSDPDSLPDDSSTAAERTDARGVVTFESLGAGSYTFYANTTSEVDTQSAGDVASA CCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC PVTITEYTPTNTALVASTVDGYRDFDLDEVSGAENGDDFVATLKDQHGEPIAGEPIEYNW CEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCCCCEEEEEHHCCCCCCCCCCEEEEE HFVPGGGGTPTDGGFTSAGTTDAKGQVAVPFPTWGTAGTYTLSVRRPNVNGSGLLNGTPV EEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCEEECCCCE TVDVAESEVTFADGDAVGAPVNGSVTIEGTLALVDGSGPLGGRTVTVSYNPGVGGDASFS EEEECCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCC TDQPAGTKRDSAVQATAVTAADGSFAVSLTDPSPPPNVPTTDESGTLTAVADGLNTGDTT CCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCC PGPADATDSISVTFRETPTVSGIDIGTQVLAPSGTGITAAGPGVPIDLDITVRGADGDDN CCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEEEEEECCCCCCC PSNDPKLGDVPVQVSVDKGFLSPNAESTDDLTLASGHDSQGDLWGYFQNDGADETVTTAD CCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECC SGSALGTTGLVAAIEKDAGFDDDGLTQLTVTVKAGDVTQKKTITYDVRALLNAGDSSFER CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEHHHHCCCCCHHHH AQGEPTGPVPTGQRVDFQLYVHDQFGNLAGDEDARVTDDSPIADFDTDEAQDKTLSDFVN HCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHH SGPGVTAFSDAPTTQMLKATMTPGEVLVDAAGNAAANSKIVAVESDPIIWVKPPAPIVAR CCCCEEEECCCCCHHHEEEECCCCEEEEECCCCCCCCCEEEEEECCCEEEECCCCCHHHH LSGLSNGGRADRLTVNAPAAAAGAKVKLYKVKRGKRTLIATGELNANGKVTFRVRDRNGE HHCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCH RFTKYVARVMATDTTKGDTTNKRRIR HHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA