| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715386
Identifier: 119715386
GI number: 119715386
Start: 1218131
End: 1218937
Strand: Direct
Name: 119715386
Synonym: Noca_1148
Alternate gene names: NA
Gene position: 1218131-1218937 (Clockwise)
Preceding gene: 119715383
Following gene: 119715387
Centisome position: 24.43
GC content: 75.46
Gene sequence:
>807_bases GTGAGCTCCGAGTTCGATCGCCAGGTCGCCGTCACCCGTCAGGACGACACGACGTACGCCGCCGATCTGGCCGCGGGCTG GGCCGTCGGCGGCGGGCTCAACGGCGGCTACCTGCTCGCCGTGATCGGCACCGCGCTGCGCCACGCGCTCCCGGACAAGC CCGACCCGGTCGCCGTGTCGGCCTACTTCCTCTCCGCCTCCACCGCCGGACCCGCCACCGTCAGCGTCGACGTGCGCCGC GACGGCGGCACCCTCGCGACCGCCGCAATCGACCTGCGGCAGGGCGACGACGTGCGGATCACCGCGCTGGCGACGTACGG CGACCTGGGCCGGCTCGGCGACGACGTCCGCACGACCGCGGACGAGCCGGACATGCCGCCCCCGGACCGGTGCGTGCCGA ACACGATGGCGCCACCGGAGGTGCGCGCGATCGCGCCGCTGATGGACCGCTTCGACATGCGCTTCCACCCCGACCACATC GGGTGGGCCGTCGGCGAGCCGAGCGGCAACGGCGTCCTGAGCGCGTGGTTCCGCCTGGCCGACGGCAGGGAGCCGGACCC GGTCTCCCTCCTCCTGGTGGTGGACGCGCTGCCGCCGGTGACCTTCGACCTCGGGATGCCCGGGTGGGCGCCCACCCTCG AGCTCACCGCGCACGTGCGCGCCCGGCCGGCGCCGGGCTGGCTCAAGGTGCGGCACGCCACCCGCAACCTGGCGGGTGGG ATGTTCGAGGAGGACTGCGAGGTCTGGGACTCCGCCGGCCGGCTGGTCGCCCAGAGCCGCCAGCTCGCCCGCCAGCCGCG GCCCTAG
Upstream 100 bases:
>100_bases TGTCTCGGTTACGGACGGCGAGAGATGAAAAGTCGCCGGTGTGATCTGTGTCATGCCGACCCGCCGGCGGCCGCGCGCCG GCGCTCCCTAGGCTCCTGGC
Downstream 100 bases:
>100_bases GTCGAGGCGATCGATCGGGGAAGCGTCACCCGGCGTAACCAAACGAAGATTCGAAGTAACGTCCGGCGGACCGCATCGTT TCCTGGGGTGTGCGGGTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MSSEFDRQVAVTRQDDTTYAADLAAGWAVGGGLNGGYLLAVIGTALRHALPDKPDPVAVSAYFLSASTAGPATVSVDVRR DGGTLATAAIDLRQGDDVRITALATYGDLGRLGDDVRTTADEPDMPPPDRCVPNTMAPPEVRAIAPLMDRFDMRFHPDHI GWAVGEPSGNGVLSAWFRLADGREPDPVSLLLVVDALPPVTFDLGMPGWAPTLELTAHVRARPAPGWLKVRHATRNLAGG MFEEDCEVWDSAGRLVAQSRQLARQPRP
Sequences:
>Translated_268_residues MSSEFDRQVAVTRQDDTTYAADLAAGWAVGGGLNGGYLLAVIGTALRHALPDKPDPVAVSAYFLSASTAGPATVSVDVRR DGGTLATAAIDLRQGDDVRITALATYGDLGRLGDDVRTTADEPDMPPPDRCVPNTMAPPEVRAIAPLMDRFDMRFHPDHI GWAVGEPSGNGVLSAWFRLADGREPDPVSLLLVVDALPPVTFDLGMPGWAPTLELTAHVRARPAPGWLKVRHATRNLAGG MFEEDCEVWDSAGRLVAQSRQLARQPRP >Mature_267_residues SSEFDRQVAVTRQDDTTYAADLAAGWAVGGGLNGGYLLAVIGTALRHALPDKPDPVAVSAYFLSASTAGPATVSVDVRRD GGTLATAAIDLRQGDDVRITALATYGDLGRLGDDVRTTADEPDMPPPDRCVPNTMAPPEVRAIAPLMDRFDMRFHPDHIG WAVGEPSGNGVLSAWFRLADGREPDPVSLLLVVDALPPVTFDLGMPGWAPTLELTAHVRARPAPGWLKVRHATRNLAGGM FEEDCEVWDSAGRLVAQSRQLARQPRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DAGKc domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001206 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28638; Mature: 28506
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEFDRQVAVTRQDDTTYAADLAAGWAVGGGLNGGYLLAVIGTALRHALPDKPDPVAVS CCCCCCCEEEEEECCCCCHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE AYFLSASTAGPATVSVDVRRDGGTLATAAIDLRQGDDVRITALATYGDLGRLGDDVRTTA EEEEECCCCCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCCHHHCCCHHHCCC DEPDMPPPDRCVPNTMAPPEVRAIAPLMDRFDMRFHPDHIGWAVGEPSGNGVLSAWFRLA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEECCCCCCCHHHHHHHHC DGREPDPVSLLLVVDALPPVTFDLGMPGWAPTLELTAHVRARPAPGWLKVRHATRNLAGG CCCCCCCEEEEEEEECCCCCEEECCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHCCC MFEEDCEVWDSAGRLVAQSRQLARQPRP CCHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SSEFDRQVAVTRQDDTTYAADLAAGWAVGGGLNGGYLLAVIGTALRHALPDKPDPVAVS CCCCCCEEEEEECCCCCHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE AYFLSASTAGPATVSVDVRRDGGTLATAAIDLRQGDDVRITALATYGDLGRLGDDVRTTA EEEEECCCCCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCCHHHCCCHHHCCC DEPDMPPPDRCVPNTMAPPEVRAIAPLMDRFDMRFHPDHIGWAVGEPSGNGVLSAWFRLA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEECCCCCCCHHHHHHHHC DGREPDPVSLLLVVDALPPVTFDLGMPGWAPTLELTAHVRARPAPGWLKVRHATRNLAGG CCCCCCCEEEEEEEECCCCCEEECCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHCCC MFEEDCEVWDSAGRLVAQSRQLARQPRP CCHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]