| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is yxlA [H]
Identifier: 119715352
GI number: 119715352
Start: 1177372
End: 1178850
Strand: Direct
Name: yxlA [H]
Synonym: Noca_1114
Alternate gene names: 119715352
Gene position: 1177372-1178850 (Clockwise)
Preceding gene: 119715351
Following gene: 119715353
Centisome position: 23.61
GC content: 65.86
Gene sequence:
>1479_bases ATGGCAAGGTATGACGTGGCACCTTCGGAGGCGCCGACTGGTGGTGGCTCGCTGCGCTGGAACAAGGTCGAGTCCCGCTC GATCGACTACGTGCCGCTCTCCGAACGGCACGGTCGGCTGACTGATCAGTTCACGATCTGGTTCGCGGGCAGCGCGATGT TGTTGAGCCTCGCCACCGGCGTCATCGGCATCGGTCTGGGTCTCAACCTGATCTGGACGCTGATCGCGTTGGCGGTGGGG ACGTTCCTGGGAACTCTTCCTGTGGCCGCGCACGCCAGTCAGGGCCCTCACCTGGGGCTTCCGCAGATGATCCAGAGTCG TCCCCAGTTCGGACGCTATGGCGCTCTGTTCATCTGGGTCGTCGCGTTCGCCGTCTACTGGGGCTACGTCGTGCTGGACG TGAACCTCTTCGGGCCCACGGCAACCCAGGTCGTGGGTGGCTCCAGGCCGGTCTGGGCGATCGTGATCGGCCTGATCTCC ATGGTGATCACGATCTTCGGCTACCACTGGATGCACGCCGGGCAGCGCTGGGTCACGGTGGTCCTCGTCGTCGTGCTGGC GGTCTACGCGGTCGGCATCCTCACGGGAGGCGAGCTGCCCGCGGGTGCTCTCAGCCTGTCGACCGGGTTCCAGTTCGCAC CGTTCTTCATGGTGATGTCGGCCGCCTTGGCCTACCAGCTCTCGTGGGCGTTCTTCGTCTCGGACTACTCCCGCTACATG CCGCCGACCACCAGCCACCGGGCGATCATCTTCTTCACGGCATCGGGTGCCGGCCTGGGCGTCTTCTCGATGGAGGCGGT CGGAGCCGTCGGTGCTGCCCTGTTCCCGTCCGAATCGGTCACCGTCGCGCTGGCGGAGTCGGGCGACACGGTCTTCAACG GGCTGGGCACCATCGTCCTCCTCGTCGGCGGTCTGGCGCTGGTCGTCTTCAACGCCATGTGCATCTACGGCGGAGCGTTG ACCGCGATCACCGCGCTGGACAGTTTGCGGCCGGTGGCACCGACCCACCGGGTCCGCACGGGCGCGATCGTCGCCGTGGG GGTGACGGCCACGCTCGTGGGGGCCTTCCTGCCAGACGACTTCATCGGCACGACCTTCTACACGATCCTCGCCGTGCTGG CCTACCTGATGGGTCCGTGGACCGCGATCAACCTCACCGACTACTTCCTGGTGCGGCGCGGCCGCTACTCCATCACCGAG ATCTTCAACCCGAACGGGATGTACGGGCGCTGGCACGCTGCAGGCATCGTCGCCTACGTCCTCGGGTTCGTGGTCATGGT GCCGTTCATGTACCTGTCCTTCTACGAGGGCTTCGCGGCGAAGTGGCTCAACGACGTGGACATCGCCTTCTTCGTCGGTA TCCCCGTTGCCGCGATCGTCTACTACGCGCTCTCCCGCAACCTCGACCTCGACAACGAGCGCGCCGTCATCCGGCAGGCA GACGCGCACCTCGAGGAGCTCGGCGAGCCCATCGAGTAG
Upstream 100 bases:
>100_bases CGCCGCTCAGCCGTGACAGGGCCCCCAGGGGCCGGAGCACTAGGGAATCGTCTACGCCCGACCGTGAACCTTCACACGGT CGTCTGGAATGAGGAGTCTG
Downstream 100 bases:
>100_bases TGCCGCCGCCCGGCGTGGCCGCCAATGGCCGACACCGCGCCGTACCACCGACGACAGCACCCGAAAGCAGGAACAGCACC ATGGACCAAACGACGGAGTT
Product: cytosine/purines, uracil, thiamine, allantoin permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MARYDVAPSEAPTGGGSLRWNKVESRSIDYVPLSERHGRLTDQFTIWFAGSAMLLSLATGVIGIGLGLNLIWTLIALAVG TFLGTLPVAAHASQGPHLGLPQMIQSRPQFGRYGALFIWVVAFAVYWGYVVLDVNLFGPTATQVVGGSRPVWAIVIGLIS MVITIFGYHWMHAGQRWVTVVLVVVLAVYAVGILTGGELPAGALSLSTGFQFAPFFMVMSAALAYQLSWAFFVSDYSRYM PPTTSHRAIIFFTASGAGLGVFSMEAVGAVGAALFPSESVTVALAESGDTVFNGLGTIVLLVGGLALVVFNAMCIYGGAL TAITALDSLRPVAPTHRVRTGAIVAVGVTATLVGAFLPDDFIGTTFYTILAVLAYLMGPWTAINLTDYFLVRRGRYSITE IFNPNGMYGRWHAAGIVAYVLGFVVMVPFMYLSFYEGFAAKWLNDVDIAFFVGIPVAAIVYYALSRNLDLDNERAVIRQA DAHLEELGEPIE
Sequences:
>Translated_492_residues MARYDVAPSEAPTGGGSLRWNKVESRSIDYVPLSERHGRLTDQFTIWFAGSAMLLSLATGVIGIGLGLNLIWTLIALAVG TFLGTLPVAAHASQGPHLGLPQMIQSRPQFGRYGALFIWVVAFAVYWGYVVLDVNLFGPTATQVVGGSRPVWAIVIGLIS MVITIFGYHWMHAGQRWVTVVLVVVLAVYAVGILTGGELPAGALSLSTGFQFAPFFMVMSAALAYQLSWAFFVSDYSRYM PPTTSHRAIIFFTASGAGLGVFSMEAVGAVGAALFPSESVTVALAESGDTVFNGLGTIVLLVGGLALVVFNAMCIYGGAL TAITALDSLRPVAPTHRVRTGAIVAVGVTATLVGAFLPDDFIGTTFYTILAVLAYLMGPWTAINLTDYFLVRRGRYSITE IFNPNGMYGRWHAAGIVAYVLGFVVMVPFMYLSFYEGFAAKWLNDVDIAFFVGIPVAAIVYYALSRNLDLDNERAVIRQA DAHLEELGEPIE >Mature_491_residues ARYDVAPSEAPTGGGSLRWNKVESRSIDYVPLSERHGRLTDQFTIWFAGSAMLLSLATGVIGIGLGLNLIWTLIALAVGT FLGTLPVAAHASQGPHLGLPQMIQSRPQFGRYGALFIWVVAFAVYWGYVVLDVNLFGPTATQVVGGSRPVWAIVIGLISM VITIFGYHWMHAGQRWVTVVLVVVLAVYAVGILTGGELPAGALSLSTGFQFAPFFMVMSAALAYQLSWAFFVSDYSRYMP PTTSHRAIIFFTASGAGLGVFSMEAVGAVGAALFPSESVTVALAESGDTVFNGLGTIVLLVGGLALVVFNAMCIYGGALT AITALDSLRPVAPTHRVRTGAIVAVGVTATLVGAFLPDDFIGTTFYTILAVLAYLMGPWTAINLTDYFLVRRGRYSITEI FNPNGMYGRWHAAGIVAYVLGFVVMVPFMYLSFYEGFAAKWLNDVDIAFFVGIPVAAIVYYALSRNLDLDNERAVIRQAD AHLEELGEPIE
Specific function: Unknown
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320903, Length=396, Percent_Identity=26.2626262626263, Blast_Score=94, Evalue=5e-20, Organism=Saccharomyces cerevisiae, GI6320897, Length=483, Percent_Identity=24.223602484472, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6320902, Length=485, Percent_Identity=21.8556701030928, Blast_Score=71, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 52834; Mature: 52703
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARYDVAPSEAPTGGGSLRWNKVESRSIDYVPLSERHGRLTDQFTIWFAGSAMLLSLATG CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH VIGIGLGLNLIWTLIALAVGTFLGTLPVAAHASQGPHLGLPQMIQSRPQFGRYGALFIWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHH VAFAVYWGYVVLDVNLFGPTATQVVGGSRPVWAIVIGLISMVITIFGYHWMHAGQRWVTV HHHHHHHCEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH VLVVVLAVYAVGILTGGELPAGALSLSTGFQFAPFFMVMSAALAYQLSWAFFVSDYSRYM HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PPTTSHRAIIFFTASGAGLGVFSMEAVGAVGAALFPSESVTVALAESGDTVFNGLGTIVL CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH LVGGLALVVFNAMCIYGGALTAITALDSLRPVAPTHRVRTGAIVAVGVTATLVGAFLPDD HHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCH FIGTTFYTILAVLAYLMGPWTAINLTDYFLVRRGRYSITEIFNPNGMYGRWHAAGIVAYV HHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHH LGFVVMVPFMYLSFYEGFAAKWLNDVDIAFFVGIPVAAIVYYALSRNLDLDNERAVIRQA HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH DAHLEELGEPIE HHHHHHCCCCCC >Mature Secondary Structure ARYDVAPSEAPTGGGSLRWNKVESRSIDYVPLSERHGRLTDQFTIWFAGSAMLLSLATG CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH VIGIGLGLNLIWTLIALAVGTFLGTLPVAAHASQGPHLGLPQMIQSRPQFGRYGALFIWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHH VAFAVYWGYVVLDVNLFGPTATQVVGGSRPVWAIVIGLISMVITIFGYHWMHAGQRWVTV HHHHHHHCEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH VLVVVLAVYAVGILTGGELPAGALSLSTGFQFAPFFMVMSAALAYQLSWAFFVSDYSRYM HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PPTTSHRAIIFFTASGAGLGVFSMEAVGAVGAALFPSESVTVALAESGDTVFNGLGTIVL CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH LVGGLALVVFNAMCIYGGALTAITALDSLRPVAPTHRVRTGAIVAVGVTATLVGAFLPDD HHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCH FIGTTFYTILAVLAYLMGPWTAINLTDYFLVRRGRYSITEIFNPNGMYGRWHAAGIVAYV HHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHH LGFVVMVPFMYLSFYEGFAAKWLNDVDIAFFVGIPVAAIVYYALSRNLDLDNERAVIRQA HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH DAHLEELGEPIE HHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]