| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is mod [H]
Identifier: 119715324
GI number: 119715324
Start: 1143851
End: 1145473
Strand: Direct
Name: mod [H]
Synonym: Noca_1085
Alternate gene names: 119715324
Gene position: 1143851-1145473 (Clockwise)
Preceding gene: 119715321
Following gene: 119715325
Centisome position: 22.94
GC content: 64.26
Gene sequence:
>1623_bases GTGACTCGTCTCGAACTCGCGTGGCCCAACAAGGACCGCTTTCTGCTCGTTCCGAAAGACGACGATGGCAAACCGATCTG GGTTGAGCGGGACCATCCGGCAGCCGCCGAGGTCCGAGTTTCGGACTTCAGCAGTTCCATCGGCGACGTGGACGAGTCGA ATCCCTATGCAGGCAACTTGCTTTTCACCGGCGACTCGCTAGATGTCCTCCGCATCTTGACGACAGTGCCGGAGTACGCA CGGCACTACAAAGGCAAAGTGCGGCTTGTCTACATCGACCCGCCATTCAACACCGGGCAGGCATTCGAGCACTACGACGA CTGGCTCGAACACGCGACGTGGCTCTCCTTCATGCGCGATCGTCTTCGACAGATCCGCGAGTTGCTCACCCCGGACGGTT CGGTGTGGGTGCACTTGGACGACGCCGAGGCTCACCACATGCGTGTGTTGCTCGATGAGGTGTTCGGCCCTGCCAACTTC CTAGGCAACGTCGCGTGGAAGCGCCGCAACGACCCCCGGAACACCGCGCAGTTCATCTCCGCAGACCACGACCAGCTACT GATCTACGGACGGGACGCCGCACGAGCGCGGTTTAACAAGCTGGAGCGCACCGAGGCGATGGACTCGGCCTACACGAATC CCGACAACGACGAGCGCGGCCCGTGGAGACGAGGAGATCTCGCCGCGCGCAACTTCTACTCACGTGGCACTTATGCGATC ACTACCCCGAGCGGGCGCGTAGTCGATGGACCCCCCAGCGGGTCGTACTGGCGCGTCTCCGAGGAGGAACTGGCTCGACT CGATTCCGATGGGCGCATCTATTGGGGGCCGAGCGGAGACTCGCGGCCGTACCTGAAGAGGTTCCTCACCGAGGTTCAGG GAGGGCGGGTTCCGTCATCGGTCTGGCACCCTGAGGAAGTCGGATTCGTACGGAACGGCAAGGAGGAAGTCCGCGCCCTC GTGGGCGATGTCTTCGCCACACCGAAGCCAGAACGGCTGCTCGAACGCGTGCTACACATCGGCTCGGACCCCGGCGACGT CGTGCTCGATTGCTTCGCCGGGTCGGGCACCACGGCGGCGGTGGCGCACAAGATGGGACGACGCTGGATCACCGCCGAAG TGCTGGGGGAGACCGTCAAGGAGTTCACACGCCCGCGGCTTGAACTGGTCGTGAAGGGTGAGGATCCGGGCGGGATCACA GGCGCAGTTGGCTGGAAGGGTGGCGGCGGGTTTCGCTGCGTTGAAGTGGGTCCGTCGATGTACGTCGATACACCGTTCGG CGTGCTGCTCTCAGACGAGGCGACGAACGGCACCTTCGCCAAGGCCGTCGCGGGTCAATTGGGTTACGACTTTCAGCCCG ACGCAGCCCCACTCTGCGGCGCTCAGGGACGCATGCGTCTGGCTGTGCTCGACGGCACGGTAGGCGCCGAAGAAGTACAG GCCGTCGTCGCCGCTCTCGCTGACGGCGAACAAGTTGAGATTGTCGGCCGTTCCGTACTGGACGGTGCTGCGGCGACGTT GCGCACGATCGCGAAAGGCTCCAAGATCACGAAGGCGCCCCGCGACCTTCTGACGGCGGCCCGCCGTATCCGTCGCCACG CCGACCGGGGGGGTGGCGAGTGA
Upstream 100 bases:
>100_bases CCGGCTCCCTTAGACGTCCGCTGACACTCGAATCGGCTCCCGCGCCCAGCACTTGGCCATCCGGCTGACGGCGTCATATG GAGGTCGGTAGCCTCAGGCA
Downstream 100 bases:
>100_bases TCGAATACGACGAGAGCCTCGTCGAGCAGGTCGCTCACACGCTGGATCTGCGCAGGCCAAACCGGGACGCCCTCGACGCG CTGGCGCAGGCCCTTGCGGC
Product: DNA methylase N-4/N-6 domain-containing protein
Products: NA
Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]
Number of amino acids: Translated: 540; Mature: 539
Protein sequence:
>540_residues MTRLELAWPNKDRFLLVPKDDDGKPIWVERDHPAAAEVRVSDFSSSIGDVDESNPYAGNLLFTGDSLDVLRILTTVPEYA RHYKGKVRLVYIDPPFNTGQAFEHYDDWLEHATWLSFMRDRLRQIRELLTPDGSVWVHLDDAEAHHMRVLLDEVFGPANF LGNVAWKRRNDPRNTAQFISADHDQLLIYGRDAARARFNKLERTEAMDSAYTNPDNDERGPWRRGDLAARNFYSRGTYAI TTPSGRVVDGPPSGSYWRVSEEELARLDSDGRIYWGPSGDSRPYLKRFLTEVQGGRVPSSVWHPEEVGFVRNGKEEVRAL VGDVFATPKPERLLERVLHIGSDPGDVVLDCFAGSGTTAAVAHKMGRRWITAEVLGETVKEFTRPRLELVVKGEDPGGIT GAVGWKGGGGFRCVEVGPSMYVDTPFGVLLSDEATNGTFAKAVAGQLGYDFQPDAAPLCGAQGRMRLAVLDGTVGAEEVQ AVVAALADGEQVEIVGRSVLDGAAATLRTIAKGSKITKAPRDLLTAARRIRRHADRGGGE
Sequences:
>Translated_540_residues MTRLELAWPNKDRFLLVPKDDDGKPIWVERDHPAAAEVRVSDFSSSIGDVDESNPYAGNLLFTGDSLDVLRILTTVPEYA RHYKGKVRLVYIDPPFNTGQAFEHYDDWLEHATWLSFMRDRLRQIRELLTPDGSVWVHLDDAEAHHMRVLLDEVFGPANF LGNVAWKRRNDPRNTAQFISADHDQLLIYGRDAARARFNKLERTEAMDSAYTNPDNDERGPWRRGDLAARNFYSRGTYAI TTPSGRVVDGPPSGSYWRVSEEELARLDSDGRIYWGPSGDSRPYLKRFLTEVQGGRVPSSVWHPEEVGFVRNGKEEVRAL VGDVFATPKPERLLERVLHIGSDPGDVVLDCFAGSGTTAAVAHKMGRRWITAEVLGETVKEFTRPRLELVVKGEDPGGIT GAVGWKGGGGFRCVEVGPSMYVDTPFGVLLSDEATNGTFAKAVAGQLGYDFQPDAAPLCGAQGRMRLAVLDGTVGAEEVQ AVVAALADGEQVEIVGRSVLDGAAATLRTIAKGSKITKAPRDLLTAARRIRRHADRGGGE >Mature_539_residues TRLELAWPNKDRFLLVPKDDDGKPIWVERDHPAAAEVRVSDFSSSIGDVDESNPYAGNLLFTGDSLDVLRILTTVPEYAR HYKGKVRLVYIDPPFNTGQAFEHYDDWLEHATWLSFMRDRLRQIRELLTPDGSVWVHLDDAEAHHMRVLLDEVFGPANFL GNVAWKRRNDPRNTAQFISADHDQLLIYGRDAARARFNKLERTEAMDSAYTNPDNDERGPWRRGDLAARNFYSRGTYAIT TPSGRVVDGPPSGSYWRVSEEELARLDSDGRIYWGPSGDSRPYLKRFLTEVQGGRVPSSVWHPEEVGFVRNGKEEVRALV GDVFATPKPERLLERVLHIGSDPGDVVLDCFAGSGTTAAVAHKMGRRWITAEVLGETVKEFTRPRLELVVKGEDPGGITG AVGWKGGGGFRCVEVGPSMYVDTPFGVLLSDEATNGTFAKAVAGQLGYDFQPDAAPLCGAQGRMRLAVLDGTVGAEEVQA VVAALADGEQVEIVGRSVLDGAAATLRTIAKGSKITKAPRDLLTAARRIRRHADRGGGE
Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 59551; Mature: 59420
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLELAWPNKDRFLLVPKDDDGKPIWVERDHPAAAEVRVSDFSSSIGDVDESNPYAGNL CCEEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCEEEHHHHHHHHCCCCCCCCCCCEE LFTGDSLDVLRILTTVPEYARHYKGKVRLVYIDPPFNTGQAFEHYDDWLEHATWLSFMRD EEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH RLRQIRELLTPDGSVWVHLDDAEAHHMRVLLDEVFGPANFLGNVAWKRRNDPRNTAQFIS HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHCHHHHCCCCCCHHHHHHC ADHDQLLIYGRDAARARFNKLERTEAMDSAYTNPDNDERGPWRRGDLAARNFYSRGTYAI CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE TTPSGRVVDGPPSGSYWRVSEEELARLDSDGRIYWGPSGDSRPYLKRFLTEVQGGRVPSS ECCCCEEECCCCCCCEEEECHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCC VWHPEEVGFVRNGKEEVRALVGDVFATPKPERLLERVLHIGSDPGDVVLDCFAGSGTTAA CCCHHHCCHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH VAHKMGRRWITAEVLGETVKEFTRPRLELVVKGEDPGGITGAVGWKGGGGFRCVEVGPSM HHHHHCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCCCEEEEEECCCE YVDTPFGVLLSDEATNGTFAKAVAGQLGYDFQPDAAPLCGAQGRMRLAVLDGTVGAEEVQ EEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH AVVAALADGEQVEIVGRSVLDGAAATLRTIAKGSKITKAPRDLLTAARRIRRHADRGGGE HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TRLELAWPNKDRFLLVPKDDDGKPIWVERDHPAAAEVRVSDFSSSIGDVDESNPYAGNL CEEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCEEEHHHHHHHHCCCCCCCCCCCEE LFTGDSLDVLRILTTVPEYARHYKGKVRLVYIDPPFNTGQAFEHYDDWLEHATWLSFMRD EEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH RLRQIRELLTPDGSVWVHLDDAEAHHMRVLLDEVFGPANFLGNVAWKRRNDPRNTAQFIS HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHCHHHHCCCCCCHHHHHHC ADHDQLLIYGRDAARARFNKLERTEAMDSAYTNPDNDERGPWRRGDLAARNFYSRGTYAI CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE TTPSGRVVDGPPSGSYWRVSEEELARLDSDGRIYWGPSGDSRPYLKRFLTEVQGGRVPSS ECCCCEEECCCCCCCEEEECHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCC VWHPEEVGFVRNGKEEVRALVGDVFATPKPERLLERVLHIGSDPGDVVLDCFAGSGTTAA CCCHHHCCHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH VAHKMGRRWITAEVLGETVKEFTRPRLELVVKGEDPGGITGAVGWKGGGGFRCVEVGPSM HHHHHCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCCCEEEEEECCCE YVDTPFGVLLSDEATNGTFAKAVAGQLGYDFQPDAAPLCGAQGRMRLAVLDGTVGAEEVQ EEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH AVVAALADGEQVEIVGRSVLDGAAATLRTIAKGSKITKAPRDLLTAARRIRRHADRGGGE HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8387444; 11677609 [H]