| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119715270
Identifier: 119715270
GI number: 119715270
Start: 1082495
End: 1084246
Strand: Reverse
Name: 119715270
Synonym: Noca_1029
Alternate gene names: NA
Gene position: 1084246-1082495 (Counterclockwise)
Preceding gene: 119715271
Following gene: 119715269
Centisome position: 21.75
GC content: 66.55
Gene sequence:
>1752_bases GTGACCACTGCGGAGTACGAGCAGCCCGCAGACCGTCGCACGCTGCGCCTCATTCGCGAGCTCGACGACGCCGCTGCAGC AGGATGCCAGGTCGTCATCACCGGCTCGGGGGTCCACGACCTCCTCATCGACCCGCAGGATCGAGCACTATGGCTACCGG ACTTGCTCACCAGCTACGCCGCCGACCGACAGAAGGGTCTCGTCATCTGGCAGCTCGCGAGCGAGCCCGAAAGCCGGGCG ACGCTTCCAGAGGGACGCTCGGTGACCGTGAAAACGGTCGACCCACAGTCACATCCCGCCGATGCAGTGCGCGGGCTCCT CACCGACCTCGCAGACGAGGCAGACCCCGCACTCCTCGTCATCGACTACATGGACCTTGTGTTGTCGAGTGACTTCGACG GGCACGAGCTCCTGCGCGCGTCCCTCCTCGAGCAGTTGCAATCGCTGGCATCCGACCACGACTGGCGGACGCACGGCCAC CAGCTCGTCCTGGTAGACCGCGGTAGCGGCATCACCCCGCACCTCACACACCAAGCTGGCTATCGCACGGTGCGCGTCGA CGCACCCGACCAGCGCGAAGCCGAGGTGTTCATCGCCAAGAAGACGAGCTCGACCGCGACCAATCGGCTGCACCTCGCAC CGGCGCTGACCGTTGATCGGGCGAGCCGGTTGGCTGGCGGCCTCCTGCTGCGCGGCATCAACGAGGCCGCCGCGCTGTCC TCAGCCGAGCGCCCATTGGAGCCGCTGACCCTGTCGCGAATGAAGGGCGCCGCGCTCGCGCAACAGTCCAAAGGCACTCT CGTGCTGCTCGATGACCCGGTCGACTTCGCTACCGACGTCGCCGGTCTGCACGCGGTGCGGTTCTACCTCACGCGCCTTC AAGCGCGCGGCAAGACGACCGCGCGTGTGCTGCTGGCAGGCCCTCCCGGAACAGGCAAGACCTACAGCGCCCGGGCCATC GCCCGATTCATGGGGATTCCGCTCGTACGTTTCGGGAAGATTCAAGGCGAGCTCATGGGCCAGACCGAGGAGTTCACCGA CACCGCGCTGGCGACCCTTGCGGCGATGTCGCCCTCCGGCGTCGAGTGGGGAGAGTTCGACCAGGCCGGCGGCGGGACCC GCAATTCGTCCGGGTCCTCCAGCAACGAGGCCTACCAGGGACAGCGCGCGAAGTTCTTCGACGCGTTGTCCAGCCCCAGC GACGACTCGGGCTTCACCGTGATCGCGTCGACGAACGTGCCCGCGCCACGCTTCATCGACTCGGCGGCGCTTGACCGTTT CGAGGTCATCCCCGTCCTCCCCGCCTCTACGTCCGAGCTCGTCGACGTAGTACGTATCAACGCACGCCAGACGCAGGTCC CCCTCGGCGACGGTATCCAGAGCGCCATCCACGACTACATGGCGAACGGACGCGTCATCAGCAATCGCACCGCCACCGAG GTGGTGGCCGACGCGCACTTCGCGGCCATCTCGCGTGGAAGTGAGAAGGTCGAGGGCCAAGACATCACGCACGTTCTCCA ACAGCGGTTCCGCGACGACTGGACCCATGACGTCGAGTATTCGACTCTCACATCGATCGTTGCCGCCAAGAAGGAGTGGG CGCTCCCGTGGGTCGCCTCGGCCGAGTTGGGCGAGTCGTACGAGCCGCCGATGTACCTCCATCACTACTTCAAGGACTCC GGCCGCCTCGACAGCGAGCGGATCGTCGCGCGGATCGACGAACTCGACCGGATGGGGGCCTACCGTGGCTGA
Upstream 100 bases:
>100_bases TCGGCGCGGTGCTCGATCACCGCGCACGGGAAGGGCGACCGATCCGCAGGATCACCGACGAGAGCGATCGTCAGACCGCG CCAGGGAAGCAGGTGGTCAA
Downstream 100 bases:
>100_bases GACCCACTGGTGGACTCCTGGCGAGTCACACCCGGACGCGATCTGGCTGACCGGGGTCCGAGCCGCACTTGAATGGTGGG AGGCCCAGGAGGCGTCATAC
Product: ATPase central domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 583; Mature: 582
Protein sequence:
>583_residues MTTAEYEQPADRRTLRLIRELDDAAAAGCQVVITGSGVHDLLIDPQDRALWLPDLLTSYAADRQKGLVIWQLASEPESRA TLPEGRSVTVKTVDPQSHPADAVRGLLTDLADEADPALLVIDYMDLVLSSDFDGHELLRASLLEQLQSLASDHDWRTHGH QLVLVDRGSGITPHLTHQAGYRTVRVDAPDQREAEVFIAKKTSSTATNRLHLAPALTVDRASRLAGGLLLRGINEAAALS SAERPLEPLTLSRMKGAALAQQSKGTLVLLDDPVDFATDVAGLHAVRFYLTRLQARGKTTARVLLAGPPGTGKTYSARAI ARFMGIPLVRFGKIQGELMGQTEEFTDTALATLAAMSPSGVEWGEFDQAGGGTRNSSGSSSNEAYQGQRAKFFDALSSPS DDSGFTVIASTNVPAPRFIDSAALDRFEVIPVLPASTSELVDVVRINARQTQVPLGDGIQSAIHDYMANGRVISNRTATE VVADAHFAAISRGSEKVEGQDITHVLQQRFRDDWTHDVEYSTLTSIVAAKKEWALPWVASAELGESYEPPMYLHHYFKDS GRLDSERIVARIDELDRMGAYRG
Sequences:
>Translated_583_residues MTTAEYEQPADRRTLRLIRELDDAAAAGCQVVITGSGVHDLLIDPQDRALWLPDLLTSYAADRQKGLVIWQLASEPESRA TLPEGRSVTVKTVDPQSHPADAVRGLLTDLADEADPALLVIDYMDLVLSSDFDGHELLRASLLEQLQSLASDHDWRTHGH QLVLVDRGSGITPHLTHQAGYRTVRVDAPDQREAEVFIAKKTSSTATNRLHLAPALTVDRASRLAGGLLLRGINEAAALS SAERPLEPLTLSRMKGAALAQQSKGTLVLLDDPVDFATDVAGLHAVRFYLTRLQARGKTTARVLLAGPPGTGKTYSARAI ARFMGIPLVRFGKIQGELMGQTEEFTDTALATLAAMSPSGVEWGEFDQAGGGTRNSSGSSSNEAYQGQRAKFFDALSSPS DDSGFTVIASTNVPAPRFIDSAALDRFEVIPVLPASTSELVDVVRINARQTQVPLGDGIQSAIHDYMANGRVISNRTATE VVADAHFAAISRGSEKVEGQDITHVLQQRFRDDWTHDVEYSTLTSIVAAKKEWALPWVASAELGESYEPPMYLHHYFKDS GRLDSERIVARIDELDRMGAYRG >Mature_582_residues TTAEYEQPADRRTLRLIRELDDAAAAGCQVVITGSGVHDLLIDPQDRALWLPDLLTSYAADRQKGLVIWQLASEPESRAT LPEGRSVTVKTVDPQSHPADAVRGLLTDLADEADPALLVIDYMDLVLSSDFDGHELLRASLLEQLQSLASDHDWRTHGHQ LVLVDRGSGITPHLTHQAGYRTVRVDAPDQREAEVFIAKKTSSTATNRLHLAPALTVDRASRLAGGLLLRGINEAAALSS AERPLEPLTLSRMKGAALAQQSKGTLVLLDDPVDFATDVAGLHAVRFYLTRLQARGKTTARVLLAGPPGTGKTYSARAIA RFMGIPLVRFGKIQGELMGQTEEFTDTALATLAAMSPSGVEWGEFDQAGGGTRNSSGSSSNEAYQGQRAKFFDALSSPSD DSGFTVIASTNVPAPRFIDSAALDRFEVIPVLPASTSELVDVVRINARQTQVPLGDGIQSAIHDYMANGRVISNRTATEV VADAHFAAISRGSEKVEGQDITHVLQQRFRDDWTHDVEYSTLTSIVAAKKEWALPWVASAELGESYEPPMYLHHYFKDSG RLDSERIVARIDELDRMGAYRG
Specific function: Unknown
COG id: COG0464
COG function: function code O; ATPases of the AAA+ class
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63323; Mature: 63192
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAEYEQPADRRTLRLIRELDDAAAAGCQVVITGSGVHDLLIDPQDRALWLPDLLTSYA CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCEEEHHHHHHHHH ADRQKGLVIWQLASEPESRATLPEGRSVTVKTVDPQSHPADAVRGLLTDLADEADPALLV HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE IDYMDLVLSSDFDGHELLRASLLEQLQSLASDHDWRTHGHQLVLVDRGSGITPHLTHQAG EEHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEECCCC YRTVRVDAPDQREAEVFIAKKTSSTATNRLHLAPALTVDRASRLAGGLLLRGINEAAALS CEEEEECCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHH SAERPLEPLTLSRMKGAALAQQSKGTLVLLDDPVDFATDVAGLHAVRFYLTRLQARGKTT CCCCCCCCHHHHHHCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCE ARVLLAGPPGTGKTYSARAIARFMGIPLVRFGKIQGELMGQTEEFTDTALATLAAMSPSG EEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCC VEWGEFDQAGGGTRNSSGSSSNEAYQGQRAKFFDALSSPSDDSGFTVIASTNVPAPRFID CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH SAALDRFEVIPVLPASTSELVDVVRINARQTQVPLGDGIQSAIHDYMANGRVISNRTATE HHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCHHH VVADAHFAAISRGSEKVEGQDITHVLQQRFRDDWTHDVEYSTLTSIVAAKKEWALPWVAS HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEC AELGESYEPPMYLHHYFKDSGRLDSERIVARIDELDRMGAYRG HHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TTAEYEQPADRRTLRLIRELDDAAAAGCQVVITGSGVHDLLIDPQDRALWLPDLLTSYA CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCEEEHHHHHHHHH ADRQKGLVIWQLASEPESRATLPEGRSVTVKTVDPQSHPADAVRGLLTDLADEADPALLV HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE IDYMDLVLSSDFDGHELLRASLLEQLQSLASDHDWRTHGHQLVLVDRGSGITPHLTHQAG EEHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEECCCC YRTVRVDAPDQREAEVFIAKKTSSTATNRLHLAPALTVDRASRLAGGLLLRGINEAAALS CEEEEECCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHH SAERPLEPLTLSRMKGAALAQQSKGTLVLLDDPVDFATDVAGLHAVRFYLTRLQARGKTT CCCCCCCCHHHHHHCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCE ARVLLAGPPGTGKTYSARAIARFMGIPLVRFGKIQGELMGQTEEFTDTALATLAAMSPSG EEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCC VEWGEFDQAGGGTRNSSGSSSNEAYQGQRAKFFDALSSPSDDSGFTVIASTNVPAPRFID CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH SAALDRFEVIPVLPASTSELVDVVRINARQTQVPLGDGIQSAIHDYMANGRVISNRTATE HHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCHHH VVADAHFAAISRGSEKVEGQDITHVLQQRFRDDWTHDVEYSTLTSIVAAKKEWALPWVAS HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEC AELGESYEPPMYLHHYFKDSGRLDSERIVARIDELDRMGAYRG HHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA