| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is yyaL [H]
Identifier: 119715264
GI number: 119715264
Start: 1074398
End: 1074589
Strand: Direct
Name: yyaL [H]
Synonym: Noca_1023
Alternate gene names: 119715264
Gene position: 1074398-1074589 (Clockwise)
Preceding gene: 119715263
Following gene: 119715265
Centisome position: 21.55
GC content: 70.83
Gene sequence:
>192_bases GTGCCCAACCGACTGGCGTCCGCGACGTCGCCGTACCTGCTCCAGCACGCCGACAACCCCGTCGACTGGTGGGAGTGGGG GCCCGAGGCGTTCGCGGAGGCCCGGCGACGGAACGTGCCGGTGCTGCTCAGCGTCGGGTACGCCGCGTGCCACTGGTGCC AGGTGAGTGAGCTAGCGCTCATGAAGCGCTGA
Upstream 100 bases:
>100_bases TCTGTCCGTGTCCTCCCCGGGTCTTGGCGTCCGGCCGAGGCACGTCCTCGCCTGGGCGCCTCTCCTCACCGTGCCTCGGC CGCACGGCTAGCGTGGCCAG
Downstream 100 bases:
>100_bases CCGACCCAAACCTGCAGGTCAGCAACGCGGCGCCTTCGTTCCTTGGCGCACCGTGGTGCGCGAAGATTCGGCACGGCTTG CGCGTTGCAGTCCGCGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 63; Mature: 62
Protein sequence:
>63_residues MPNRLASATSPYLLQHADNPVDWWEWGPEAFAEARRRNVPVLLSVGYAACHWCQVSELALMKR
Sequences:
>Translated_63_residues MPNRLASATSPYLLQHADNPVDWWEWGPEAFAEARRRNVPVLLSVGYAACHWCQVSELALMKR >Mature_62_residues PNRLASATSPYLLQHADNPVDWWEWGPEAFAEARRRNVPVLLSVGYAACHWCQVSELALMKR
Specific function: Unknown
COG id: COG1331
COG function: function code O; Highly conserved protein containing a thioredoxin domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To C.elegans B0495.5 [H]
Homologues:
Organism=Homo sapiens, GI31542723, Length=57, Percent_Identity=63.1578947368421, Blast_Score=87, Evalue=4e-18, Organism=Caenorhabditis elegans, GI25147430, Length=55, Percent_Identity=61.8181818181818, Blast_Score=90, Evalue=3e-19, Organism=Drosophila melanogaster, GI20129985, Length=55, Percent_Identity=63.6363636363636, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR010819 - InterPro: IPR004879 - InterPro: IPR005198 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF03190 DUF255; PF07221 GlcNAc_2-epim; PF03663 Glyco_hydro_76 [H]
EC number: NA
Molecular weight: Translated: 7210; Mature: 7079
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNRLASATSPYLLQHADNPVDWWEWGPEAFAEARRRNVPVLLSVGYAACHWCQVSELAL CCCCCCCCCCCEEECCCCCCCCHHCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH MKR HCC >Mature Secondary Structure PNRLASATSPYLLQHADNPVDWWEWGPEAFAEARRRNVPVLLSVGYAACHWCQVSELAL CCCCCCCCCCEEECCCCCCCCHHCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH MKR HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]