| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715114
Identifier: 119715114
GI number: 119715114
Start: 907548
End: 908882
Strand: Direct
Name: 119715114
Synonym: Noca_0869
Alternate gene names: NA
Gene position: 907548-908882 (Clockwise)
Preceding gene: 119715112
Following gene: 119715115
Centisome position: 18.2
GC content: 68.54
Gene sequence:
>1335_bases ATGAAGCGCACATCACCCGTCTCGGGCTCGCTCGCCGGGATCACCGCCCCCCGGCCGACGCGTCGTGGCCTGCTCGTGGG CGGAGGTGCGCTCGGCCTGTCCGGCCTGCTGGTCGCGTGCGGGGTCGGCGGTGGCGGCGGCGAGAAGGGCGGTGGTGGCA GCGGCAGCGGCAGCATCCGCGCCCTGTTCATGCAGCAGGCGGGCTACTCCGAGGACAACATCAAGGAGATGACGGCGGCC TTCATGAAGGCCAACACCGACATCAAGGTCACCGCCGACTTCGTCTCCTACGAGGCGCTGCACGACAAGATCGTGGCGGC CGCGCCGGCGGGCACCTATGACGTCGTGCTGATCGACGTGATCTGGCCGGCCGAGTTCGGCACCAAGAACATCGTCGCCG ACGTCACCGACCGGTGGCCCGACGAGTGGAAGCAGCAGATGCTCGGCGGCGCGGTCGCGACGCCGCAGTACGACGGCAAG TTCTACGGGGTCCCGTGGATCCTGGACACCAAGTATCTCTTCTACAACACCGCCCAGCTCGAGAAGGCGAAGGTCGACGC CGGCGAGCTCGACACCTGGGACGGCGTCCTCAGCGCGGCCCGCGCGCTCAAGCAGAGCGGTGTCCAGTACCCGCTGATCT GGTCCTGGCAGCAGGCGGAGGCCTTGATCTGCGACTACACCCAGCTCCTCGGTGCCTTCGGCGGAACCTTCCTCGACGAC GCGGGCCAGCCCGCGTTCAACCAGGGAGGCGGCGTCGCTGCGCTGGAGTTCATGCGGCAGAGCATCGTCGACGGGCTCAC CAACCCCGCCTCGACGCAGTCGCTCGAGGAGGACGTGCGGCGCGTGTTCTCCTCCGGTCAGGCCAGCATCGCCCTGAACT GGACCTACATGTACGGCCTCGCCAACGACCCCAAGGAGAGCCAGATCCCCGGCGACGTCGCGGTGCTGCAGACCCCGAGC GGCCCGGTCGGCCGCCCCGGCGTGAACGGCAGCATGGCGCTCTCCCTCTCCGCGACCAGTGAGAACCAGGATGCCGGCTG GAAGTACATCGAGTACCTCACCAGCCAGCCGGTCCAGGACAAGTACGCCCTCAGCTCGCTGCCCGTGTGGTCGTCGTCGT ACGACGACCCCAAGGTCGTCGACACGAACCCCGCCGTCGTGCCGCAGGCCAAGAAGCAGCTCGGCGACATGATCCTGCGG CCCCAGGTCGCCAGCTACAACGCGATGTCCCAGGTGCTCCAGGCCGAGATCCAGAAGGCCCTGCTCGGTGACAAGGAGCC GCAGCAGGCGCTGGACGACGCAGCCTCCCAGGCGGCCGACCTGCTGGAGTCCTGA
Upstream 100 bases:
>100_bases TGGTGCGGCAGTCACAAATCTCCTTCGTCGCTCTTGACGCGTCCCGGTGCCGCTGACAATATCCATTCAATAAGCAACCT GCCTAACAAATGGAGATGTC
Downstream 100 bases:
>100_bases TCGTGTCCTCGACCCTGCGAGCGGGTAGGCGCCTCCGGGTCCGCGGCGGTCAGCACGAGGGGCGCTTCGCGCTGCTCCTG CTGCTGCCTGCGGCCGTGGT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MKRTSPVSGSLAGITAPRPTRRGLLVGGGALGLSGLLVACGVGGGGGEKGGGGSGSGSIRALFMQQAGYSEDNIKEMTAA FMKANTDIKVTADFVSYEALHDKIVAAAPAGTYDVVLIDVIWPAEFGTKNIVADVTDRWPDEWKQQMLGGAVATPQYDGK FYGVPWILDTKYLFYNTAQLEKAKVDAGELDTWDGVLSAARALKQSGVQYPLIWSWQQAEALICDYTQLLGAFGGTFLDD AGQPAFNQGGGVAALEFMRQSIVDGLTNPASTQSLEEDVRRVFSSGQASIALNWTYMYGLANDPKESQIPGDVAVLQTPS GPVGRPGVNGSMALSLSATSENQDAGWKYIEYLTSQPVQDKYALSSLPVWSSSYDDPKVVDTNPAVVPQAKKQLGDMILR PQVASYNAMSQVLQAEIQKALLGDKEPQQALDDAASQAADLLES
Sequences:
>Translated_444_residues MKRTSPVSGSLAGITAPRPTRRGLLVGGGALGLSGLLVACGVGGGGGEKGGGGSGSGSIRALFMQQAGYSEDNIKEMTAA FMKANTDIKVTADFVSYEALHDKIVAAAPAGTYDVVLIDVIWPAEFGTKNIVADVTDRWPDEWKQQMLGGAVATPQYDGK FYGVPWILDTKYLFYNTAQLEKAKVDAGELDTWDGVLSAARALKQSGVQYPLIWSWQQAEALICDYTQLLGAFGGTFLDD AGQPAFNQGGGVAALEFMRQSIVDGLTNPASTQSLEEDVRRVFSSGQASIALNWTYMYGLANDPKESQIPGDVAVLQTPS GPVGRPGVNGSMALSLSATSENQDAGWKYIEYLTSQPVQDKYALSSLPVWSSSYDDPKVVDTNPAVVPQAKKQLGDMILR PQVASYNAMSQVLQAEIQKALLGDKEPQQALDDAASQAADLLES >Mature_444_residues MKRTSPVSGSLAGITAPRPTRRGLLVGGGALGLSGLLVACGVGGGGGEKGGGGSGSGSIRALFMQQAGYSEDNIKEMTAA FMKANTDIKVTADFVSYEALHDKIVAAAPAGTYDVVLIDVIWPAEFGTKNIVADVTDRWPDEWKQQMLGGAVATPQYDGK FYGVPWILDTKYLFYNTAQLEKAKVDAGELDTWDGVLSAARALKQSGVQYPLIWSWQQAEALICDYTQLLGAFGGTFLDD AGQPAFNQGGGVAALEFMRQSIVDGLTNPASTQSLEEDVRRVFSSGQASIALNWTYMYGLANDPKESQIPGDVAVLQTPS GPVGRPGVNGSMALSLSATSENQDAGWKYIEYLTSQPVQDKYALSSLPVWSSSYDDPKVVDTNPAVVPQAKKQLGDMILR PQVASYNAMSQVLQAEIQKALLGDKEPQQALDDAASQAADLLES
Specific function: Probably part of a binding-protein-dependent transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 47124; Mature: 47124
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTSPVSGSLAGITAPRPTRRGLLVGGGALGLSGLLVACGVGGGGGEKGGGGSGSGSIR CCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEE ALFMQQAGYSEDNIKEMTAAFMKANTDIKVTADFVSYEALHDKIVAAAPAGTYDVVLIDV EEEEHHCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHEECCCCCEEEEEEEE IWPAEFGTKNIVADVTDRWPDEWKQQMLGGAVATPQYDGKFYGVPWILDTKYLFYNTAQL EECCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCEEEEECHHH EKAKVDAGELDTWDGVLSAARALKQSGVQYPLIWSWQQAEALICDYTQLLGAFGGTFLDD HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCHHCC AGQPAFNQGGGVAALEFMRQSIVDGLTNPASTQSLEEDVRRVFSSGQASIALNWTYMYGL CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEC ANDPKESQIPGDVAVLQTPSGPVGRPGVNGSMALSLSATSENQDAGWKYIEYLTSQPVQD CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCH KYALSSLPVWSSSYDDPKVVDTNPAVVPQAKKQLGDMILRPQVASYNAMSQVLQAEIQKA HHHHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LLGDKEPQQALDDAASQAADLLES HHCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKRTSPVSGSLAGITAPRPTRRGLLVGGGALGLSGLLVACGVGGGGGEKGGGGSGSGSIR CCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEE ALFMQQAGYSEDNIKEMTAAFMKANTDIKVTADFVSYEALHDKIVAAAPAGTYDVVLIDV EEEEHHCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHEECCCCCEEEEEEEE IWPAEFGTKNIVADVTDRWPDEWKQQMLGGAVATPQYDGKFYGVPWILDTKYLFYNTAQL EECCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCEEEEECHHH EKAKVDAGELDTWDGVLSAARALKQSGVQYPLIWSWQQAEALICDYTQLLGAFGGTFLDD HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCHHCC AGQPAFNQGGGVAALEFMRQSIVDGLTNPASTQSLEEDVRRVFSSGQASIALNWTYMYGL CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEC ANDPKESQIPGDVAVLQTPSGPVGRPGVNGSMALSLSATSENQDAGWKYIEYLTSQPVQD CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCH KYALSSLPVWSSSYDDPKVVDTNPAVVPQAKKQLGDMILRPQVASYNAMSQVLQAEIQKA HHHHHCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LLGDKEPQQALDDAASQAADLLES HHCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10567266 [H]