| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is menB [C]
Identifier: 119715107
GI number: 119715107
Start: 900219
End: 900980
Strand: Direct
Name: menB [C]
Synonym: Noca_0862
Alternate gene names: 119715107
Gene position: 900219-900980 (Clockwise)
Preceding gene: 119715106
Following gene: 119715108
Centisome position: 18.06
GC content: 72.83
Gene sequence:
>762_bases GTGAGTGGCCTGCTCCGGGTCGGGACCCGGCAGGGCTTCGACACCCTGGAGATCGACTCGCCCACGAACCGCAACGCTCT CTCGGTCGAGCTGCTCACCGCGCTGCACGACGAGGTGCGTCGCTCGGCGACCGGCACGGGCCGCGGACTCCTGGTCCAGC ACGTCGGGCCGGCGTTCTGCTCCGGCGTGGACCTCAAGGAGCGCGCGGCACTCGGCCCTGACGACAGCTCCCACTCCGAG CTCCTCGCCCACCTGCTCCGCGAGCTCTGGCACTACCCCAAGCCCGTCGTGGTCATGGTCGACGGTGCCGTGCGTGGTGG CGGCTTGGGACTGCTGGCCTGCGCCGACGTCGTCCTGGCGACGGCCCGCTCGAGCTTCGCCTACTCCGAGTCGCGGGTCG GCGTCGCGCCGGCGCTGGTGATGGCCGTGACGCTGCCGCTCGCCGACGTCCGCGCGCTGGTGCCGCGGCTGCTCGACGGC GCGGTGTTCGGGGCGGTGACCGCGCACGAGCTCGGCCTGGTCACCAGGGTCGTCGAGGACGCGTCGAAGGTCTCGACGGT CCTCTCCGAGCTCCGCCAGGGCGCCCCCGATGCACAGCGCGTGATCAAGACACTGGCCCGACAACGGATCGGAGTGGACG TGGACGGTCTCCTGGTGGAGATGGCCGGCGTGTCGGCCCGGCTCTTCGCCGGCGCGGAGGCGGCCGAAGGCGTCGCCGCG TTCACCTCCAGGCGCAGCCCGTCGTGGGTGGTGGCCCGATGA
Upstream 100 bases:
>100_bases ACGCGGCGTACGAACCGCCCGCGGTGCTGGTCGACCTCGTCGCCGCCGGGCACCTCGGCAAGAAGTCCGGTCGTGGCTTC TACGACTACGAGGCGCAGTC
Downstream 100 bases:
>100_bases CCGCCGTCGCCGGCATGTCCCGAGCGCTCGCACGCGCGGAGTCGGCCAAGGCGCTCGACGTCGCCGAGGCCGTCGTACTC CTGCAGGCACGCGGGGTGGA
Product: enoyl-CoA hydratase/isomerase
Products: NA
Alternate protein names: 3-hydroxypropionyl-CoA dehydratase [H]
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MSGLLRVGTRQGFDTLEIDSPTNRNALSVELLTALHDEVRRSATGTGRGLLVQHVGPAFCSGVDLKERAALGPDDSSHSE LLAHLLRELWHYPKPVVVMVDGAVRGGGLGLLACADVVLATARSSFAYSESRVGVAPALVMAVTLPLADVRALVPRLLDG AVFGAVTAHELGLVTRVVEDASKVSTVLSELRQGAPDAQRVIKTLARQRIGVDVDGLLVEMAGVSARLFAGAEAAEGVAA FTSRRSPSWVVAR
Sequences:
>Translated_253_residues MSGLLRVGTRQGFDTLEIDSPTNRNALSVELLTALHDEVRRSATGTGRGLLVQHVGPAFCSGVDLKERAALGPDDSSHSE LLAHLLRELWHYPKPVVVMVDGAVRGGGLGLLACADVVLATARSSFAYSESRVGVAPALVMAVTLPLADVRALVPRLLDG AVFGAVTAHELGLVTRVVEDASKVSTVLSELRQGAPDAQRVIKTLARQRIGVDVDGLLVEMAGVSARLFAGAEAAEGVAA FTSRRSPSWVVAR >Mature_252_residues SGLLRVGTRQGFDTLEIDSPTNRNALSVELLTALHDEVRRSATGTGRGLLVQHVGPAFCSGVDLKERAALGPDDSSHSEL LAHLLRELWHYPKPVVVMVDGAVRGGGLGLLACADVVLATARSSFAYSESRVGVAPALVMAVTLPLADVRALVPRLLDGA VFGAVTAHELGLVTRVVEDASKVSTVLSELRQGAPDAQRVIKTLARQRIGVDVDGLLVEMAGVSARLFAGAEAAEGVAAF TSRRSPSWVVAR
Specific function: Plays a role in autotrophic carbon fixation via the 3- hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl- CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crot
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI31542718, Length=256, Percent_Identity=26.171875, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI194097323, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI87082183, Length=201, Percent_Identity=26.3681592039801, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI221142681, Length=206, Percent_Identity=29.126213592233, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787660, Length=261, Percent_Identity=28.735632183908, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787659, Length=264, Percent_Identity=28.030303030303, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25145438, Length=261, Percent_Identity=25.6704980842912, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17554946, Length=259, Percent_Identity=24.3243243243243, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24653139, Length=254, Percent_Identity=28.3464566929134, Blast_Score=85, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.116 [H]
Molecular weight: Translated: 26545; Mature: 26414
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLLRVGTRQGFDTLEIDSPTNRNALSVELLTALHDEVRRSATGTGRGLLVQHVGPAFC CCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHCCHHHH SGVDLKERAALGPDDSSHSELLAHLLRELWHYPKPVVVMVDGAVRGGGLGLLACADVVLA CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH TARSSFAYSESRVGVAPALVMAVTLPLADVRALVPRLLDGAVFGAVTAHELGLVTRVVED HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASKVSTVLSELRQGAPDAQRVIKTLARQRIGVDVDGLLVEMAGVSARLFAGAEAAEGVAA HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCCHHHHHHHH FTSRRSPSWVVAR HHCCCCCCEEECC >Mature Secondary Structure SGLLRVGTRQGFDTLEIDSPTNRNALSVELLTALHDEVRRSATGTGRGLLVQHVGPAFC CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHCCHHHH SGVDLKERAALGPDDSSHSELLAHLLRELWHYPKPVVVMVDGAVRGGGLGLLACADVVLA CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH TARSSFAYSESRVGVAPALVMAVTLPLADVRALVPRLLDGAVFGAVTAHELGLVTRVVED HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASKVSTVLSELRQGAPDAQRVIKTLARQRIGVDVDGLLVEMAGVSARLFAGAEAAEGVAA HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCCHHHHHHHH FTSRRSPSWVVAR HHCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA