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The map label for this gene is nodD1 [H]

Identifier: 119714940

GI number: 119714940

Start: 732574

End: 733476

Strand: Reverse

Name: nodD1 [H]

Synonym: Noca_0693

Alternate gene names: 119714940

Gene position: 733476-732574 (Counterclockwise)

Preceding gene: 119714963

Following gene: 119714935

Centisome position: 14.71

GC content: 69.32

Gene sequence:

>903_bases
ATGAACGTGACGAACGTCGATCTCAACCTGCTGGTCGCCCTGGACGCCCTGTTGACCGAGCGCAGCGTGACCCGGGCGGC
TGAGCGACTGTCAGTCGGGCAGCCGGCGATGAGCGCAACCCTCGGCCGACTCCGCAAGCTGTTCGGCGACCAGCTGTTCG
TGCGCACGGGTGGCGACATGGTCCCGACCGCCATGGGGCAGGCCCTGGTCGGACCGGTCACGGAGGCGATCCGGGCCGTC
CAGGCGGTGCTGGACGTGGTGGACGCCTTCGATCCGACGACGGATCGACGGACCTTCACCGTGATGGCCAGCGACTACGT
GGGACTCGTCCTGATCCGTCCCCTGGTGCGCAGGCTGAGTGTGGAGGCGCCCGAGGTGCGCCTGATCGTGCAGCCGGTGG
CGGCTGACTACGAGGCGATGATTCGTCAGGGGCGGGTGGACCTAGCGATCCTGCCCGGCGAGATGCTCGATCCCGCGCCC
GAGCTGCGGCGAGAGTCGCTGTTCCAGGACCGTTACGTGTTCGCGGTCGACGCGGACGACGCCAGCATCGGCGACCGGCT
GACCATCGAGCAGCTGGCGTCGCACCGTCGCCTGGCCACCGGTGACCGCGAGCTACCGGCATTGGGCGACCGCCAGCTGG
ACGGCCTCACCCTCGACCCCGCGGCCGAGCTGAGCACCCAGACGTCCCTCCTCGCCCCGTTCTTCGTAGCCGGCACCGGG
CTCATCATCCTGACGCTCCAGAGACTCGTGGACGAGCTCGGATGGGCCGGGATCAGGGCCGTCGAACCGCCGCTCCCCCT
GCGAACCATCGACGAGTGCCTGTTCTGGAGCATCCGCCGCGACTCCGACGTCGGCCACCGGTGGCTGCGCCAGGAGATCC
TGACGACCGCCCAACAGCTGTGA

Upstream 100 bases:

>100_bases
GCCATCGCCACAGGTCGTGCCGAGCACCCGTAGGCTGGACGGGTGGGCGCGACGTGCCCGGGAGAGGAGCGCCTGTGGGT
TCGGTGCGTCCGGTCTGCGC

Downstream 100 bases:

>100_bases
CCGAGGCGCTGCGCCGGCGGGCGGACGCCGGCGCAGCGCCTCGGTCACAGCGGCGGGCGGAGGGCCTGGGGCGGGCGACG
TCTCCTCGCAGGCTCCCCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNVTNVDLNLLVALDALLTERSVTRAAERLSVGQPAMSATLGRLRKLFGDQLFVRTGGDMVPTAMGQALVGPVTEAIRAV
QAVLDVVDAFDPTTDRRTFTVMASDYVGLVLIRPLVRRLSVEAPEVRLIVQPVAADYEAMIRQGRVDLAILPGEMLDPAP
ELRRESLFQDRYVFAVDADDASIGDRLTIEQLASHRRLATGDRELPALGDRQLDGLTLDPAAELSTQTSLLAPFFVAGTG
LIILTLQRLVDELGWAGIRAVEPPLPLRTIDECLFWSIRRDSDVGHRWLRQEILTTAQQL

Sequences:

>Translated_300_residues
MNVTNVDLNLLVALDALLTERSVTRAAERLSVGQPAMSATLGRLRKLFGDQLFVRTGGDMVPTAMGQALVGPVTEAIRAV
QAVLDVVDAFDPTTDRRTFTVMASDYVGLVLIRPLVRRLSVEAPEVRLIVQPVAADYEAMIRQGRVDLAILPGEMLDPAP
ELRRESLFQDRYVFAVDADDASIGDRLTIEQLASHRRLATGDRELPALGDRQLDGLTLDPAAELSTQTSLLAPFFVAGTG
LIILTLQRLVDELGWAGIRAVEPPLPLRTIDECLFWSIRRDSDVGHRWLRQEILTTAQQL
>Mature_300_residues
MNVTNVDLNLLVALDALLTERSVTRAAERLSVGQPAMSATLGRLRKLFGDQLFVRTGGDMVPTAMGQALVGPVTEAIRAV
QAVLDVVDAFDPTTDRRTFTVMASDYVGLVLIRPLVRRLSVEAPEVRLIVQPVAADYEAMIRQGRVDLAILPGEMLDPAP
ELRRESLFQDRYVFAVDADDASIGDRLTIEQLASHRRLATGDRELPALGDRQLDGLTLDPAAELSTQTSLLAPFFVAGTG
LIILTLQRLVDELGWAGIRAVEPPLPLRTIDECLFWSIRRDSDVGHRWLRQEILTTAQQL

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=300, Percent_Identity=25.6666666666667, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87081766, Length=210, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33000; Mature: 33000

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTNVDLNLLVALDALLTERSVTRAAERLSVGQPAMSATLGRLRKLFGDQLFVRTGGDM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCC
VPTAMGQALVGPVTEAIRAVQAVLDVVDAFDPTTDRRTFTVMASDYVGLVLIRPLVRRLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHC
VEAPEVRLIVQPVAADYEAMIRQGRVDLAILPGEMLDPAPELRRESLFQDRYVFAVDADD
CCCCCEEEEEEHHHHHHHHHHHCCCCCEEECCCHHCCCCHHHHHHHHHHCCEEEEEECCC
ASIGDRLTIEQLASHRRLATGDRELPALGDRQLDGLTLDPAAELSTQTSLLAPFFVAGTG
CCCCCCEEHHHHHHCCHHCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHH
LIILTLQRLVDELGWAGIRAVEPPLPLRTIDECLFWSIRRDSDVGHRWLRQEILTTAQQL
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNVTNVDLNLLVALDALLTERSVTRAAERLSVGQPAMSATLGRLRKLFGDQLFVRTGGDM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCC
VPTAMGQALVGPVTEAIRAVQAVLDVVDAFDPTTDRRTFTVMASDYVGLVLIRPLVRRLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHC
VEAPEVRLIVQPVAADYEAMIRQGRVDLAILPGEMLDPAPELRRESLFQDRYVFAVDADD
CCCCCEEEEEEHHHHHHHHHHHCCCCCEEECCCHHCCCCHHHHHHHHHHCCEEEEEECCC
ASIGDRLTIEQLASHRRLATGDRELPALGDRQLDGLTLDPAAELSTQTSLLAPFFVAGTG
CCCCCCEEHHHHHHCCHHCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHH
LIILTLQRLVDELGWAGIRAVEPPLPLRTIDECLFWSIRRDSDVGHRWLRQEILTTAQQL
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631662 [H]