Click here to switch to the map view.

The map label for this gene is allR [H]

Identifier: 119714934

GI number: 119714934

Start: 726069

End: 726860

Strand: Reverse

Name: allR [H]

Synonym: Noca_0687

Alternate gene names: 119714934

Gene position: 726860-726069 (Counterclockwise)

Preceding gene: 119714935

Following gene: 119714929

Centisome position: 14.58

GC content: 70.58

Gene sequence:

>792_bases
ATGAGTGAGACCAGCCCAGCCCCACGCGGCCAGCACGTGAAGTCGCTGTCGCGGAGCACGCTGGTCATGCGCGTCCTCGC
GGACAAGCCCATGCGGCCCGCCGACCTCTCGCGCGAGCTGGACAAGCCCTGGGCGACGATCTACCGCGCGGTACGTGTGC
TGACCGACGAAGGCATGCTCCAGCGCGATCCCGACACGGGCGAGTACTCCGTCGGTCCGATGATGTGGGCGATGGCAACC
TCCTACATCCGCGACCACCCGGTTCTGGGCATCGGGCTCGGCCACCTCGAGCAGGCGCTGCCCCACGTACCCGGCCTGCT
CAAGGTCACCGAGCGCAGCGGCTTCAACGCCGTCACGCTCTTCGCCGAGCAGAACCCTCAGGCCGCAGCGGTCACCCGGA
TCCGAGAGCAGTACCGCCTGCCGCTGCACTGCGCCTCGTTCGGGATCGTGCTGCTGGCACACGCACCCGCCGACTTCGTC
GAGGGCTACCTCGCACGTCCGCTGGTGGCGGTCAGCCCGCGCACCATCACCGACCCCACGGCGCTGCGTAAGCGTCTCGC
CGAGGTCCGCGAACAGGGCTACGCCGCGTCCCGGGCCGAGCTCCAGGACGACAACGGCTCGCTGTCGGTGCCGATCCGGC
GCAAGGACGGCAGCGTCGCCGCAGCGCTCACCAGCGTGCTGCCTCTCCCGGTGCTCGACGACGCGGACGGGCAGGCAGTC
CAGCTGAAGACGCTGTCGGAGACCGCCGGGCGGATCTCGGAAGCGCTGGGCTGGCGGGGGGCCTACGGCTGA

Upstream 100 bases:

>100_bases
TGTGAGAATGGGGGCAGGCCGTCGACTGGATATCCGCACTGTGGCTAGATTAGCCACAGTGCGGATATCCAGGTCCGCCG
GCTCGACAGGATGGCATGCC

Downstream 100 bases:

>100_bases
GCCGGGCCGGCACTCGGGTCAGGCGCGAGCGGGGGCGGGCAGTCCTGCGACGAGGGCGCATGCGTCCGTCAGCGCGAGGC
CGTCCTCCCAGGCGCGTCGC

Product: regulatory proteins IclR

Products: NA

Alternate protein names: Negative regulator of allantoin and glyoxylate utilization operons [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSETSPAPRGQHVKSLSRSTLVMRVLADKPMRPADLSRELDKPWATIYRAVRVLTDEGMLQRDPDTGEYSVGPMMWAMAT
SYIRDHPVLGIGLGHLEQALPHVPGLLKVTERSGFNAVTLFAEQNPQAAAVTRIREQYRLPLHCASFGIVLLAHAPADFV
EGYLARPLVAVSPRTITDPTALRKRLAEVREQGYAASRAELQDDNGSLSVPIRRKDGSVAAALTSVLPLPVLDDADGQAV
QLKTLSETAGRISEALGWRGAYG

Sequences:

>Translated_263_residues
MSETSPAPRGQHVKSLSRSTLVMRVLADKPMRPADLSRELDKPWATIYRAVRVLTDEGMLQRDPDTGEYSVGPMMWAMAT
SYIRDHPVLGIGLGHLEQALPHVPGLLKVTERSGFNAVTLFAEQNPQAAAVTRIREQYRLPLHCASFGIVLLAHAPADFV
EGYLARPLVAVSPRTITDPTALRKRLAEVREQGYAASRAELQDDNGSLSVPIRRKDGSVAAALTSVLPLPVLDDADGQAV
QLKTLSETAGRISEALGWRGAYG
>Mature_262_residues
SETSPAPRGQHVKSLSRSTLVMRVLADKPMRPADLSRELDKPWATIYRAVRVLTDEGMLQRDPDTGEYSVGPMMWAMATS
YIRDHPVLGIGLGHLEQALPHVPGLLKVTERSGFNAVTLFAEQNPQAAAVTRIREQYRLPLHCASFGIVLLAHAPADFVE
GYLARPLVAVSPRTITDPTALRKRLAEVREQGYAASRAELQDDNGSLSVPIRRKDGSVAAALTSVLPLPVLDDADGQAVQ
LKTLSETAGRISEALGWRGAYG

Specific function: Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS- allA intergenic region [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1789999, Length=263, Percent_Identity=25.0950570342205, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786715, Length=227, Percent_Identity=26.8722466960352, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28582; Mature: 28451

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETSPAPRGQHVKSLSRSTLVMRVLADKPMRPADLSRELDKPWATIYRAVRVLTDEGML
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCC
QRDPDTGEYSVGPMMWAMATSYIRDHPVLGIGLGHLEQALPHVPGLLKVTERSGFNAVTL
CCCCCCCCEECHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCEEECCCCCCCEEEE
FAEQNPQAAAVTRIREQYRLPLHCASFGIVLLAHAPADFVEGYLARPLVAVSPRTITDPT
EECCCCHHHHHHHHHHHHCCCHHHHHHCEEEEECCCHHHHHHHHHCCEEEECCCCCCCHH
ALRKRLAEVREQGYAASRAELQDDNGSLSVPIRRKDGSVAAALTSVLPLPVLDDADGQAV
HHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEE
QLKTLSETAGRISEALGWRGAYG
EEEHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SETSPAPRGQHVKSLSRSTLVMRVLADKPMRPADLSRELDKPWATIYRAVRVLTDEGML
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCC
QRDPDTGEYSVGPMMWAMATSYIRDHPVLGIGLGHLEQALPHVPGLLKVTERSGFNAVTL
CCCCCCCCEECHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCEEECCCCCCCEEEE
FAEQNPQAAAVTRIREQYRLPLHCASFGIVLLAHAPADFVEGYLARPLVAVSPRTITDPT
EECCCCHHHHHHHHHHHHCCCHHHHHHCEEEEECCCHHHHHHHHHCCEEEECCCCCCCHH
ALRKRLAEVREQGYAASRAELQDDNGSLSVPIRRKDGSVAAALTSVLPLPVLDDADGQAV
HHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEE
QLKTLSETAGRISEALGWRGAYG
EEEHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA