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The map label for this gene is yagI [H]

Identifier: 119714929

GI number: 119714929

Start: 721453

End: 722223

Strand: Reverse

Name: yagI [H]

Synonym: Noca_0681

Alternate gene names: 119714929

Gene position: 722223-721453 (Counterclockwise)

Preceding gene: 119714934

Following gene: 119714928

Centisome position: 14.49

GC content: 69.78

Gene sequence:

>771_bases
ATGTCGAACGATGATGGTCAGCGCGTTCCAGCCGTGAGTTCCGCCGCCAACGCGCTGCGCCTGCTCATGCTGCTCGAGCA
CCAGCCCTCCCTGAGGGTCGTGGACGCCTCCAGGGCGCTCAACGTCGCCGGGTCGACCGCCCATCGGCTGCTGACCTGTC
TCAAGGACGAGGGATTCCTTCGCCAGCCCGCGGGATCCAGGGCGTACGTGGCGGGACCCAACATCCTCAAGCTCGCCCGG
CACTTCAGCGACCAGAACTCGCTGGAGCGGATCGCTCACACCCACCTCGAGCGGCTGTGCAAGCAGGTGAACGAGGCGGT
CAACCTGCAGGTGCTCGTGGGCCACGAGGTGCTCTGCCTCGACGCGGTGGTCGAGGATCGGCACGGCCTCCAGGTTCGAA
GCATCCGGGGCCAACGCGTGTCGGCGTCGGTGTCGGCGGCCGGCAAGGTCCTGCTCGCGGCCCTCAAGCCCGCCGAGCTG
GAGGAGGCACTCGGCCAGGATCCGCGGCACCCGGATGCCGACTGGAGCGCGACGCTGCACGCAGAGCTCGCAACCATCCG
TGAGTTCGGCTACGCCACGAACATGGGCGAGCGCGAGCCCGGCGTCCACGCGGTGGCCGTTCCGATCAACGACCCCACCG
GCAAGTCGATCGCCGCCCTCGCCGTCGCGGCGCCCTCGGTCCGCCTGCCGCACGTGCGCGTCAGCGGCCTGATCACTCAC
CTGCGCGCGGCCAGCGGCGCGATCACCCTGGACTACTTCGGCTCGGACTGA

Upstream 100 bases:

>100_bases
CCCATCCCGCTCCACGGCTCGCTTCGCGGCCGCACGCTACTCCGGTTGCGCCGGCGCCGACCGGATACCTCACGCTGACG
GCACGCCCTATGATTCCGCC

Downstream 100 bases:

>100_bases
CTGCCGCTCCTTTTCCTCACAGGGGAATGTTTCGAGAGATCGTTCCACCTTGCTCGACCGCCTGATTACTGTGCGCGGCA
CACCCAGAGCCAGGGCCGGC

Product: regulatory proteins IclR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSNDDGQRVPAVSSAANALRLLMLLEHQPSLRVVDASRALNVAGSTAHRLLTCLKDEGFLRQPAGSRAYVAGPNILKLAR
HFSDQNSLERIAHTHLERLCKQVNEAVNLQVLVGHEVLCLDAVVEDRHGLQVRSIRGQRVSASVSAAGKVLLAALKPAEL
EEALGQDPRHPDADWSATLHAELATIREFGYATNMGEREPGVHAVAVPINDPTGKSIAALAVAAPSVRLPHVRVSGLITH
LRAASGAITLDYFGSD

Sequences:

>Translated_256_residues
MSNDDGQRVPAVSSAANALRLLMLLEHQPSLRVVDASRALNVAGSTAHRLLTCLKDEGFLRQPAGSRAYVAGPNILKLAR
HFSDQNSLERIAHTHLERLCKQVNEAVNLQVLVGHEVLCLDAVVEDRHGLQVRSIRGQRVSASVSAAGKVLLAALKPAEL
EEALGQDPRHPDADWSATLHAELATIREFGYATNMGEREPGVHAVAVPINDPTGKSIAALAVAAPSVRLPHVRVSGLITH
LRAASGAITLDYFGSD
>Mature_255_residues
SNDDGQRVPAVSSAANALRLLMLLEHQPSLRVVDASRALNVAGSTAHRLLTCLKDEGFLRQPAGSRAYVAGPNILKLARH
FSDQNSLERIAHTHLERLCKQVNEAVNLQVLVGHEVLCLDAVVEDRHGLQVRSIRGQRVSASVSAAGKVLLAALKPAELE
EALGQDPRHPDADWSATLHAELATIREFGYATNMGEREPGVHAVAVPINDPTGKSIAALAVAAPSVRLPHVRVSGLITHL
RAASGAITLDYFGSD

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=246, Percent_Identity=27.6422764227642, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788131, Length=254, Percent_Identity=25.5905511811024, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082359, Length=250, Percent_Identity=26.8, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786715, Length=237, Percent_Identity=27.0042194092827, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27356; Mature: 27225

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNDDGQRVPAVSSAANALRLLMLLEHQPSLRVVDASRALNVAGSTAHRLLTCLKDEGFL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCHHHHHHHHHHHCCCCE
RQPAGSRAYVAGPNILKLARHFSDQNSLERIAHTHLERLCKQVNEAVNLQVLVGHEVLCL
ECCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEH
DAVVEDRHGLQVRSIRGQRVSASVSAAGKVLLAALKPAELEEALGQDPRHPDADWSATLH
HHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHH
AELATIREFGYATNMGEREPGVHAVAVPINDPTGKSIAALAVAAPSVRLPHVRVSGLITH
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHEEHEEECCCCCCCCHHHHHHHHH
LRAASGAITLDYFGSD
HHHCCCEEEEEECCCC
>Mature Secondary Structure 
SNDDGQRVPAVSSAANALRLLMLLEHQPSLRVVDASRALNVAGSTAHRLLTCLKDEGFL
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCHHHHHHHHHHHCCCCE
RQPAGSRAYVAGPNILKLARHFSDQNSLERIAHTHLERLCKQVNEAVNLQVLVGHEVLCL
ECCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEH
DAVVEDRHGLQVRSIRGQRVSASVSAAGKVLLAALKPAELEEALGQDPRHPDADWSATLH
HHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHH
AELATIREFGYATNMGEREPGVHAVAVPINDPTGKSIAALAVAAPSVRLPHVRVSGLITH
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHEEHEEECCCCCCCCHHHHHHHHH
LRAASGAITLDYFGSD
HHHCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]