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The map label for this gene is rbsC [H]

Identifier: 119714928

GI number: 119714928

Start: 720263

End: 721294

Strand: Reverse

Name: rbsC [H]

Synonym: Noca_0680

Alternate gene names: 119714928

Gene position: 721294-720263 (Counterclockwise)

Preceding gene: 119714929

Following gene: 119714927

Centisome position: 14.47

GC content: 69.09

Gene sequence:

>1032_bases
GTGACCACATCGTCGAAGATCCGCACCGACCTCGCGGTCGATCCGACCGCCACCGGTGACGACCGCGCGAGCAGCGGCTC
GGGTGGTGGCGATCTCGCCACCCACTTGCAGCGGTACGCGCTGCTCCTCGCCCTGGTCGCGCTGATCGCCGTGTTCTCCG
TCCTTCGGACCGAGACCTTCTTCACCGTCGCCAACCTCACCACGATCCTGAGCATCCAGGCGACCGCCGCCATGCTCGCG
ATGGGCGTCACGCTGGTGCTCATCATCGGAGAGTTCGACCTCTCCGTCGCCGCGGTCATGGGGTTGTCGGCAAGCCTGAT
CGCCTACCTGACCACCGAGCACGGCGTCTCGGTGCCCCTGGCCTGCCTGGTCGCACTGGCGCTGGCCGCGATCGTCGGCC
TCGTCAACGCGGCGCTGGTCGTCGGCGCGGGACTCAACTCGTTCATCGTCACCCTCGCGGTCGGGACCCTGGTCCAGGGG
CTGGCCATCGGTGTCGCCGGCTCCGTGACCATCGGCGGCCTCCCGACGTCGTTGACCTACCCCTTCCAGAGCCGGTTCCT
CGACGTCCAGGCGGCGTTCTTCTTCATGCTCGCCGTGGCCTTCGTCCTCTACCTCGTGGTGGGCCGGATGCCGATCGGGC
GGAGCATGTTCTTCACCGGCAATGCTCGGGCCGCCGCCGAGCTCGCCGGGGTCCGCACCGCCCGGGTACGCGTCGGGGTG
ATGATGACCGCGGGACTGCTCGCCGGTGCCGCGGGCGTCATGTTCGTGGGGCAGACCGGCGCCGCCAGCCCGTCGATCGC
CGACCCGTTCCTGCTGCCCGCCTACGCCGCTGGGTTCCTCGGCGCTACTGCGTTCACCCCCGGTCGGTTCAACGTCTGGG
GGTCGGTGTGGGCGGTCTACCTGCTCGCCGTCGGTACCACCGGCTTCCAGTTCCTCGGACTCGACAACTGGGTGATCAAT
GTCTTCAACGGCGGCGTTCTGGTCCTCGCCGTCGGCCTCAGTCGCTTCTTCGCCCGCAAGGCCCGCACCTGA

Upstream 100 bases:

>100_bases
CGCCTGATTACTGTGCGCGGCACACCCAGAGCCAGGGCCGGCTGCCCCGGCGCCCCGCACGCGGAGGCCGGCCCCTCACC
AGCACGGAGGCGAGCCGCGC

Downstream 100 bases:

>100_bases
GCACCTCCCCTCCGCCCGTCTCGGAACCGCGCCAACCGAAGGAAGAGAACATGTCCCAGAAGCCCCTGCGGCTGCTCGCA
GCCGCCGTCGTCTCCGCCTC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTTSSKIRTDLAVDPTATGDDRASSGSGGGDLATHLQRYALLLALVALIAVFSVLRTETFFTVANLTTILSIQATAAMLA
MGVTLVLIIGEFDLSVAAVMGLSASLIAYLTTEHGVSVPLACLVALALAAIVGLVNAALVVGAGLNSFIVTLAVGTLVQG
LAIGVAGSVTIGGLPTSLTYPFQSRFLDVQAAFFFMLAVAFVLYLVVGRMPIGRSMFFTGNARAAAELAGVRTARVRVGV
MMTAGLLAGAAGVMFVGQTGAASPSIADPFLLPAYAAGFLGATAFTPGRFNVWGSVWAVYLLAVGTTGFQFLGLDNWVIN
VFNGGVLVLAVGLSRFFARKART

Sequences:

>Translated_343_residues
MTTSSKIRTDLAVDPTATGDDRASSGSGGGDLATHLQRYALLLALVALIAVFSVLRTETFFTVANLTTILSIQATAAMLA
MGVTLVLIIGEFDLSVAAVMGLSASLIAYLTTEHGVSVPLACLVALALAAIVGLVNAALVVGAGLNSFIVTLAVGTLVQG
LAIGVAGSVTIGGLPTSLTYPFQSRFLDVQAAFFFMLAVAFVLYLVVGRMPIGRSMFFTGNARAAAELAGVRTARVRVGV
MMTAGLLAGAAGVMFVGQTGAASPSIADPFLLPAYAAGFLGATAFTPGRFNVWGSVWAVYLLAVGTTGFQFLGLDNWVIN
VFNGGVLVLAVGLSRFFARKART
>Mature_342_residues
TTSSKIRTDLAVDPTATGDDRASSGSGGGDLATHLQRYALLLALVALIAVFSVLRTETFFTVANLTTILSIQATAAMLAM
GVTLVLIIGEFDLSVAAVMGLSASLIAYLTTEHGVSVPLACLVALALAAIVGLVNAALVVGAGLNSFIVTLAVGTLVQGL
AIGVAGSVTIGGLPTSLTYPFQSRFLDVQAAFFFMLAVAFVLYLVVGRMPIGRSMFFTGNARAAAELAGVRTARVRVGVM
MTAGLLAGAAGVMFVGQTGAASPSIADPFLLPAYAAGFLGATAFTPGRFNVWGSVWAVYLLAVGTTGFQFLGLDNWVINV
FNGGVLVLAVGLSRFFARKART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=310, Percent_Identity=25.8064516129032, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1788896, Length=303, Percent_Identity=27.0627062706271, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=28.1967213114754, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787793, Length=204, Percent_Identity=31.3725490196078, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787794, Length=282, Percent_Identity=27.3049645390071, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI145693152, Length=305, Percent_Identity=23.9344262295082, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35184; Mature: 35053

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00306 CASEIN_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSSKIRTDLAVDPTATGDDRASSGSGGGDLATHLQRYALLLALVALIAVFSVLRTETF
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTVANLTTILSIQATAAMLAMGVTLVLIIGEFDLSVAAVMGLSASLIAYLTTEHGVSVPL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
ACLVALALAAIVGLVNAALVVGAGLNSFIVTLAVGTLVQGLAIGVAGSVTIGGLPTSLTY
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
PFQSRFLDVQAAFFFMLAVAFVLYLVVGRMPIGRSMFFTGNARAAAELAGVRTARVRVGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHH
MMTAGLLAGAAGVMFVGQTGAASPSIADPFLLPAYAAGFLGATAFTPGRFNVWGSVWAVY
HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LLAVGTTGFQFLGLDNWVINVFNGGVLVLAVGLSRFFARKART
HHHHCCCCEEEECCCHHEEEECCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTSSKIRTDLAVDPTATGDDRASSGSGGGDLATHLQRYALLLALVALIAVFSVLRTETF
CCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTVANLTTILSIQATAAMLAMGVTLVLIIGEFDLSVAAVMGLSASLIAYLTTEHGVSVPL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
ACLVALALAAIVGLVNAALVVGAGLNSFIVTLAVGTLVQGLAIGVAGSVTIGGLPTSLTY
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
PFQSRFLDVQAAFFFMLAVAFVLYLVVGRMPIGRSMFFTGNARAAAELAGVRTARVRVGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHH
MMTAGLLAGAAGVMFVGQTGAASPSIADPFLLPAYAAGFLGATAFTPGRFNVWGSVWAVY
HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LLAVGTTGFQFLGLDNWVINVFNGGVLVLAVGLSRFFARKART
HHHHCCCCEEEECCCHHEEEECCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]