| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
Click here to switch to the map view.
The map label for this gene is 119386474
Identifier: 119386474
GI number: 119386474
Start: 901837
End: 903876
Strand: Direct
Name: 119386474
Synonym: Pden_3767
Alternate gene names: NA
Gene position: 901837-903876 (Clockwise)
Preceding gene: 119386473
Following gene: 119386475
Centisome position: 52.13
GC content: 66.72
Gene sequence:
>2040_bases ATGCCGGCCGCGCGTATCCAGCCCACATTCGCCTCTGGCGTTCTCGGCCCCGCGCTCTGGGGCCGCATCGATCTGGCGCG CTACGACAGTGCGCTTCGCAAGGGGCGCAACGTATTCGTCCACGCCCACGGCGGCGTCAGCAACCGGCCGGGCCTGCGGT TCGTCTGCGAGGTCATGGACAGCGCGCATCGCCACCGGCTGCTGCCCTTCGTGCGGGAAGCCGACGACGCCTCGATCCTG ATCATGGGCCAGAACGAAATGGGGTTCGTGAAGAACGGCGCGCGGCTCCAGTCCGGCGGCGTGGACTACACCATTGCCAC GCCATGGACGGCGACCCAGGCGCAGGCGCTGGATGCAGTGCAATCCGTCGACGTGATCTTTGCCGCCCACCGGCAGGTTG CGCCGCGCCGCATCATGCGCAACGGCGAGACGGATTGGAGCATCGCCACCGTTCCGATCAACCCGACCGTGGCGGCGCCG ACGATCAGCAGCGTGACGCCGCGCAACAGCGGCGACGAAACCTATCGCTATCGCGTGACGGCCGTGGTCGGTGGCGTCGA AAGCTTCGCCTCGGCGCCGCTGGCCACCACGGCGGCGGAACTGCTCAGCATCGAGGGCGCCTGGAACGACATCGCGTTCT CCGCGGTCACCGGAGCCACGGAATACCGGGTCTATCGCATGCGCAACGGCGTGCCGGGCTATATCGGTTTCACGACCGGA ACGTCATTCCGCGACGACAACATTTCGCCCGACAGCACCGTGACGCCGCCGGTTCAGGCCAGCCTGTTCGATGCCGCGGG CAAATATCCCTCGGTCGTCTCGATCTACCAGCAGCGCCTTGCTTTCGGCGCGAGCGATGCGCAGCCCGAGACGGTCTGGC TGTCCCGCGTCGGCGATTACCTGAACTTCACCCGGTCGCAGAACATGACCTCCTCCGACCGGGCCGAGTTCGACATGGCC GGAGAACAGCTGAACCGCATCCGCGCCATGCTCCAGCTGCGCGAGCTGCTGGTGTTCACCAGCGCGGGCGAGTTCTCCGT TTCCGGGCCTGACGGCGGTTTCGACGCGCTGAATCCCATCGTCACCCAGCACGGCTATATCGGCAGCGCGACGGTCAAGC CGCTGGTGGCCGACGACACGGTGCTGTTCGTCGACCGCTCCGGCCGGGGCGTGCGCGATCTGCGCTATGCCTATGAAAGC GACGGATACTCGGGCAACGATCTGGCCATCTTCGCCTCGCACTTCCTGCAGGGGCGCCGGATCGTTGGCTGGGCCATGGC CAAGAACCCCTGGTCGATCATCTGGGTGGTGCTGGACAACGGCAAGCTGCTGGCGCTGACCTACAAGCGCGAGCATCAGG TCTGGGCGTGGACAGAGATGGATATCGACGGCGCGGTCGAAAGCGTGGCCTGCATCCCCGAGGGCGCCAGCGACGCCACC TATCTGATCGTGCGCCGGCTTATCGATGGCCAGCAGCGGCGCTATGTCGAACGCTTCGACGACCGGGATTTCGCCACGGC GGCCGATGCGTTCTTCGTCGATTGCGGCATCAGCTATTCCGGGTCGGCCACCACCACGATCAGCGGCCTTGATCACCTGG AGGGCAGGGAGGTCATTGCCCTGGCCGACGGCGATGTCGTCACGGGGCTGACGGTCGAGGGCGGGTCGGTCACCCTGCCG CACGCCGCTGGCGTGGTGCATGTAGGCCTGCCGTTCACCGCCGAGATGGAGACGCTACCGCCCGCCATCCAGTTCGATGA TGTCGGATCGGCGCGCGGCCGGCCGCACAGCGTCAGCGCGGTGCGTATCCAGATGGAGAACACCCGCGGGGTGAAGGTCG TTACCGACGACGGCCGGGCCAGCGAGCTGGTGCAGACCGGCGGCGATCTTGCCGATGAAATCCCGCTCTGGACCGGCATG CATGAGCTGACGGTGCCGGCGCAATGGAACCGGGACGGCACAGTGACGCTGCGCCAGGACTATCCGCTGCCCATGACGGT GCTGGCGGTTTCGGTCGAGCTGTCGATAGGTCGGAACTGA
Upstream 100 bases:
>100_bases CGTCGGAATTGCTGGATCAGGCGATGGTGGCCGATTTCAACAGCCGGCCGGCGACGGAACAGACCTTCTATCCCATGCAG CTGCGCGTGAGGGGCTACTG
Downstream 100 bases:
>100_bases CATGGCGGTCACGGTCGCGCCCATCACCGCCGACGTGATCGACGCCCTGCTGCCGCGCCTGCGCCCCATCGACCGCCTGG AGCTGGATTGCATGGGCACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 679; Mature: 678
Protein sequence:
>679_residues MPAARIQPTFASGVLGPALWGRIDLARYDSALRKGRNVFVHAHGGVSNRPGLRFVCEVMDSAHRHRLLPFVREADDASIL IMGQNEMGFVKNGARLQSGGVDYTIATPWTATQAQALDAVQSVDVIFAAHRQVAPRRIMRNGETDWSIATVPINPTVAAP TISSVTPRNSGDETYRYRVTAVVGGVESFASAPLATTAAELLSIEGAWNDIAFSAVTGATEYRVYRMRNGVPGYIGFTTG TSFRDDNISPDSTVTPPVQASLFDAAGKYPSVVSIYQQRLAFGASDAQPETVWLSRVGDYLNFTRSQNMTSSDRAEFDMA GEQLNRIRAMLQLRELLVFTSAGEFSVSGPDGGFDALNPIVTQHGYIGSATVKPLVADDTVLFVDRSGRGVRDLRYAYES DGYSGNDLAIFASHFLQGRRIVGWAMAKNPWSIIWVVLDNGKLLALTYKREHQVWAWTEMDIDGAVESVACIPEGASDAT YLIVRRLIDGQQRRYVERFDDRDFATAADAFFVDCGISYSGSATTTISGLDHLEGREVIALADGDVVTGLTVEGGSVTLP HAAGVVHVGLPFTAEMETLPPAIQFDDVGSARGRPHSVSAVRIQMENTRGVKVVTDDGRASELVQTGGDLADEIPLWTGM HELTVPAQWNRDGTVTLRQDYPLPMTVLAVSVELSIGRN
Sequences:
>Translated_679_residues MPAARIQPTFASGVLGPALWGRIDLARYDSALRKGRNVFVHAHGGVSNRPGLRFVCEVMDSAHRHRLLPFVREADDASIL IMGQNEMGFVKNGARLQSGGVDYTIATPWTATQAQALDAVQSVDVIFAAHRQVAPRRIMRNGETDWSIATVPINPTVAAP TISSVTPRNSGDETYRYRVTAVVGGVESFASAPLATTAAELLSIEGAWNDIAFSAVTGATEYRVYRMRNGVPGYIGFTTG TSFRDDNISPDSTVTPPVQASLFDAAGKYPSVVSIYQQRLAFGASDAQPETVWLSRVGDYLNFTRSQNMTSSDRAEFDMA GEQLNRIRAMLQLRELLVFTSAGEFSVSGPDGGFDALNPIVTQHGYIGSATVKPLVADDTVLFVDRSGRGVRDLRYAYES DGYSGNDLAIFASHFLQGRRIVGWAMAKNPWSIIWVVLDNGKLLALTYKREHQVWAWTEMDIDGAVESVACIPEGASDAT YLIVRRLIDGQQRRYVERFDDRDFATAADAFFVDCGISYSGSATTTISGLDHLEGREVIALADGDVVTGLTVEGGSVTLP HAAGVVHVGLPFTAEMETLPPAIQFDDVGSARGRPHSVSAVRIQMENTRGVKVVTDDGRASELVQTGGDLADEIPLWTGM HELTVPAQWNRDGTVTLRQDYPLPMTVLAVSVELSIGRN >Mature_678_residues PAARIQPTFASGVLGPALWGRIDLARYDSALRKGRNVFVHAHGGVSNRPGLRFVCEVMDSAHRHRLLPFVREADDASILI MGQNEMGFVKNGARLQSGGVDYTIATPWTATQAQALDAVQSVDVIFAAHRQVAPRRIMRNGETDWSIATVPINPTVAAPT ISSVTPRNSGDETYRYRVTAVVGGVESFASAPLATTAAELLSIEGAWNDIAFSAVTGATEYRVYRMRNGVPGYIGFTTGT SFRDDNISPDSTVTPPVQASLFDAAGKYPSVVSIYQQRLAFGASDAQPETVWLSRVGDYLNFTRSQNMTSSDRAEFDMAG EQLNRIRAMLQLRELLVFTSAGEFSVSGPDGGFDALNPIVTQHGYIGSATVKPLVADDTVLFVDRSGRGVRDLRYAYESD GYSGNDLAIFASHFLQGRRIVGWAMAKNPWSIIWVVLDNGKLLALTYKREHQVWAWTEMDIDGAVESVACIPEGASDATY LIVRRLIDGQQRRYVERFDDRDFATAADAFFVDCGISYSGSATTTISGLDHLEGREVIALADGDVVTGLTVEGGSVTLPH AAGVVHVGLPFTAEMETLPPAIQFDDVGSARGRPHSVSAVRIQMENTRGVKVVTDDGRASELVQTGGDLADEIPLWTGMH ELTVPAQWNRDGTVTLRQDYPLPMTVLAVSVELSIGRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73618; Mature: 73486
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAARIQPTFASGVLGPALWGRIDLARYDSALRKGRNVFVHAHGGVSNRPGLRFVCEVMD CCCCCCCCCHHHCCCCHHHHCCEEHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH SAHRHRLLPFVREADDASILIMGQNEMGFVKNGARLQSGGVDYTIATPWTATQAQALDAV HHHHHHHCHHHHCCCCCEEEEECCCCCCEECCCCEEECCCCCEEEECCCCCHHHHHHHHH QSVDVIFAAHRQVAPRRIMRNGETDWSIATVPINPTVAAPTISSVTPRNSGDETYRYRVT HHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVGGVESFASAPLATTAAELLSIEGAWNDIAFSAVTGATEYRVYRMRNGVPGYIGFTTG EEECCHHHHHCCCHHHHHHHHHEECCCCCCEEEEEECCCHHEEEEEECCCCCCEEEECCC TSFRDDNISPDSTVTPPVQASLFDAAGKYPSVVSIYQQRLAFGASDAQPETVWLSRVGDY CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LNFTRSQNMTSSDRAEFDMAGEQLNRIRAMLQLRELLVFTSAGEFSVSGPDGGFDALNPI HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEECCCCCCHHHHHHH VTQHGYIGSATVKPLVADDTVLFVDRSGRGVRDLRYAYESDGYSGNDLAIFASHFLQGRR HHCCCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHEEEHHHHCCCE IVGWAMAKNPWSIIWVVLDNGKLLALTYKREHQVWAWTEMDIDGAVESVACIPEGASDAT EEEEEECCCCEEEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCHHHEEECCCCCCCHH YLIVRRLIDGQQRRYVERFDDRDFATAADAFFVDCGISYSGSATTTISGLDHLEGREVIA HHHHHHHHCCHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCEEEE LADGDVVTGLTVEGGSVTLPHAAGVVHVGLPFTAEMETLPPAIQFDDVGSARGRPHSVSA EECCCEEEEEEECCCCEECCCCCCEEEECCCCEECHHHCCCCEEECCCCCCCCCCCCEEE VRIQMENTRGVKVVTDDGRASELVQTGGDLADEIPLWTGMHELTVPAQWNRDGTVTLRQD EEEEEECCCCEEEEECCCCHHHHHHCCCCCHHCCCCCCCCEEEECCCEECCCCCEEEECC YPLPMTVLAVSVELSIGRN CCCCEEEEEEEEEEEECCC >Mature Secondary Structure PAARIQPTFASGVLGPALWGRIDLARYDSALRKGRNVFVHAHGGVSNRPGLRFVCEVMD CCCCCCCCHHHCCCCHHHHCCEEHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH SAHRHRLLPFVREADDASILIMGQNEMGFVKNGARLQSGGVDYTIATPWTATQAQALDAV HHHHHHHCHHHHCCCCCEEEEECCCCCCEECCCCEEECCCCCEEEECCCCCHHHHHHHHH QSVDVIFAAHRQVAPRRIMRNGETDWSIATVPINPTVAAPTISSVTPRNSGDETYRYRVT HHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVGGVESFASAPLATTAAELLSIEGAWNDIAFSAVTGATEYRVYRMRNGVPGYIGFTTG EEECCHHHHHCCCHHHHHHHHHEECCCCCCEEEEEECCCHHEEEEEECCCCCCEEEECCC TSFRDDNISPDSTVTPPVQASLFDAAGKYPSVVSIYQQRLAFGASDAQPETVWLSRVGDY CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LNFTRSQNMTSSDRAEFDMAGEQLNRIRAMLQLRELLVFTSAGEFSVSGPDGGFDALNPI HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEECCCCCCHHHHHHH VTQHGYIGSATVKPLVADDTVLFVDRSGRGVRDLRYAYESDGYSGNDLAIFASHFLQGRR HHCCCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHEEEHHHHCCCE IVGWAMAKNPWSIIWVVLDNGKLLALTYKREHQVWAWTEMDIDGAVESVACIPEGASDAT EEEEEECCCCEEEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCHHHEEECCCCCCCHH YLIVRRLIDGQQRRYVERFDDRDFATAADAFFVDCGISYSGSATTTISGLDHLEGREVIA HHHHHHHHCCHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCEEEE LADGDVVTGLTVEGGSVTLPHAAGVVHVGLPFTAEMETLPPAIQFDDVGSARGRPHSVSA EECCCEEEEEEECCCCEECCCCCCEEEECCCCEECHHHCCCCEEECCCCCCCCCCCCEEE VRIQMENTRGVKVVTDDGRASELVQTGGDLADEIPLWTGMHELTVPAQWNRDGTVTLRQD EEEEEECCCCEEEEECCCCHHHHHHCCCCCHHCCCCCCCCEEEECCCEECCCCCEEEECC YPLPMTVLAVSVELSIGRN CCCCEEEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA