| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
Click here to switch to the map view.
The map label for this gene is 119386304
Identifier: 119386304
GI number: 119386304
Start: 745691
End: 747589
Strand: Direct
Name: 119386304
Synonym: Pden_3596
Alternate gene names: NA
Gene position: 745691-747589 (Clockwise)
Preceding gene: 119386301
Following gene: 119386305
Centisome position: 43.1
GC content: 61.3
Gene sequence:
>1899_bases ATGCGCCTTGCCGATGCGGCCACCCAGATGCAGAACTCCTTGCGCGTTGCCGGCCTTGAGGGTGCGGAACTGTCGCGCGT CTATGACCAACTGTTCCGGTCGGCGCAGAGAAACTCGGCCCCTATCAATTCTCTGGTCGATCTTTATTCCAAACTGGCCT TGACCCAAAAGGAATTGGGCGTCACCGGGGACGATCTGATCCGGTTTACGGATGGGATCGCGGTCGCACTCAAGGTGGCC GGGACTGATGCAGTCAGCGCCAGCGGGTCGCTCTTGCAGCTTTCGCAGGCGCTCGGCGGTGGTGTGGTCCGGGCCGAGGA ATTCAACTCGATTCTTGAAGGAACTCCGACGATTGCGCAGGCCGTGGCGCGCGGCTTGAAAGAGGCGAATGGTTCCGTGG CCGAGCTTCGCAAGCTGGTGGTTGACGGTCAGGTTTCCAGCACTGCATTTTTCCGCGCTTTCGAGGCTGGATCGGGCGAG TTGCGCCGGCAGGCTGAAACGTCGCAGACCACAGTCGGGCAGGCGTTCACGCGGCTCGGCAACAGCCTTGTGACTGTGGT GGGCGAGTTTGACAAGGCAACGGGCGCGTCGGCAGCCCTTGCCGAGGGTATCAGCAGCTTGGGTTCCGGTCTGGATCGGT TCGACGCCGAAGGGTTTATTTCCCAACTCCAAGACATCGCGGATGCCATTCGTGATGCTGATGAGGCCGGCAGAGACTGG CTGAACTCAATCGGGAATTCCGACCTTTTCAAGAGCGATACCGATGCGGAAGAATGGTTCAACAGGGTCACGAACCCGGA TGTAGGAAAGGCCCAGGACAAGATCGATCTGCTCGAACGCGAGATCGAAACCCTCCAAGCTGCCATAGAGAACAATACCC AGATGGGCTTCGACAACAGCGAGGCTCTGTCCCGTTTGGCAGAGGTCCGCTCGGAACTTGCCGCCGTGCGCGCCGAAGCC GCCGCGCTGCCCTCGTATTTCCCTGGGGCCAACATGATGAGCACCGGGACGTTCATCGGCTTGGATGGCTACACCCCGCC GCCGTCTGCGCCAAGTGTCGAGCCGGTCAGCATTGCCGATCACCCAGCGGCGCCCGGCAAGGGCGGCTCCAAGGGTCGCA AGAAGGGCGGATCTGGCGGCCGCAGCCGCAAAGAGCAACTGGATGACTACGCCAAGGAGGTAAAGGCAATCCGTGAACGC ACTGCGGCTCTGGAAGTCGAGGCTGCGTCTCTGTTGCTAGTAGCGGAAAGCGGCGAGGATTATGGCGATGCGCTGGAATA TGCCCGAAAGCGCGCCGAACTCCTGCACGCTGCCCAGAAGGCCGGCAAGCAGATCACCCCGGAATTGAGCGCGGAAATCG ATCAACTCGCGCAATCCTATGTCACTGCCGGTCTGAACGCCGAACAGGCCGCCGAGAAGCTGGACCAGATCAAGGGTGCG ACCGAGCGCGGCAAGAATGCGCTGGAAGATATGTTCGGTTCGATCATCGACGGGTCGGCCTCGGCTAAGGACGCGGTGGC TTCTCTTCTGGCCGAGATTGCCAAGGCCCAGATCATGAAGGGGATTCTTGGCCTGCCGGGCATGGGAAGTCTTTCCAGCA CCATCGGCGGGCTGTTGTCCTTCGATGGAGGCGGCTTCACGGGCCACGGCTCGCGCAGCGGCGGCATCGATGGCAGGGGC GGCTTCCCCGCGATTCTACATCCCAATGAGACGGTGATTGATCATACACGCGGGCAGGGCGGCAGCTCCCCCAAGATCAC CATCAACAACAACGCTCCAGGCGCGGTGGTGTCGGCTGACTACGCGACCAAGGACGAAGTGATCCTGACCGTCTCGCAGG CTATCGCCTCGAACAATCGGCGCCAGTCAGACCAGCAATATCTCAGGGGTAGCCGCTGA
Upstream 100 bases:
>100_bases GGTCCGGCGCATAACGGGGATCGCGCAGCCACTTGAAGATCAGGTTCGCGTTAGCGGATTGCTTGCCGGCGGCGTTGCTG CACAGCAGGTGCGGCAGTAT
Downstream 100 bases:
>100_bases TGCAGGTATCGTTTCCGTTCCCGGTCAAGCTGCAATCCTCGGTGCCGAAGCTTGAGGGGCTGCGCTTCCAGCCCTTTACG AACATCGACAGCGAGACCTT
Product: phage tape measure protein
Products: NA
Alternate protein names: Tail Tape Measure Protein; Phage-Related Minor Tail Protein; Tail Length Tape Measure Protein; Tape Measure Domain-Containing Protein; Bacteriophage-Related Protein; Bacteriophage-Related Protein Tape Measure Domain; Prophage; Bacteriophage Protein; Bacteriophage Tail Protein; Bacteriophage Tail Tape Meausure Protein; Tail Tape Meausure Protein; Phage Protein; Tape Measure Domain Protein; Tail Component Of Prophage Protein
Number of amino acids: Translated: 632; Mature: 632
Protein sequence:
>632_residues MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELGVTGDDLIRFTDGIAVALKVA GTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQAVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGE LRRQAETSQTTVGQAFTRLGNSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNSEALSRLAEVRSELAAVRAEA AALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIADHPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRER TAALEVEAASLLLVAESGEDYGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLSFDGGGFTGHGSRSGGIDGRG GFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSADYATKDEVILTVSQAIASNNRRQSDQQYLRGSR
Sequences:
>Translated_632_residues MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELGVTGDDLIRFTDGIAVALKVA GTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQAVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGE LRRQAETSQTTVGQAFTRLGNSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNSEALSRLAEVRSELAAVRAEA AALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIADHPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRER TAALEVEAASLLLVAESGEDYGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLSFDGGGFTGHGSRSGGIDGRG GFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSADYATKDEVILTVSQAIASNNRRQSDQQYLRGSR >Mature_632_residues MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELGVTGDDLIRFTDGIAVALKVA GTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQAVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGE LRRQAETSQTTVGQAFTRLGNSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNSEALSRLAEVRSELAAVRAEA AALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIADHPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRER TAALEVEAASLLLVAESGEDYGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLSFDGGGFTGHGSRSGGIDGRG GFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSADYATKDEVILTVSQAIASNNRRQSDQQYLRGSR
Specific function: Unknown
COG id: COG5281
COG function: function code S; Phage-related minor tail protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66125; Mature: 66125
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELG CCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC VTGDDLIRFTDGIAVALKVAGTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQ CCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCHHHH AVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGELRRQAETSQTTVGQAFTRLG HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC NSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNS HHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH EALSRLAEVRSELAAVRAEAAALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIAD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC HPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRERTAALEVEAASLLLVAESGED CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHEEEEEECCCCC YGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC FDGGGFTGHGSRSGGIDGRGGFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSAD CCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCEEEECCCCCCCEEECC YATKDEVILTVSQAIASNNRRQSDQQYLRGSR CCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCC >Mature Secondary Structure MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELG CCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC VTGDDLIRFTDGIAVALKVAGTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQ CCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCHHHH AVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGELRRQAETSQTTVGQAFTRLG HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC NSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNS HHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH EALSRLAEVRSELAAVRAEAAALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIAD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC HPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRERTAALEVEAASLLLVAESGED CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHEEEEEECCCCC YGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC FDGGGFTGHGSRSGGIDGRGGFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSAD CCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCEEEECCCCCCCEEECC YATKDEVILTVSQAIASNNRRQSDQQYLRGSR CCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA