Click here to switch to the map view.

The map label for this gene is gylR [H]

Identifier: 119386239

GI number: 119386239

Start: 678951

End: 679748

Strand: Direct

Name: gylR [H]

Synonym: Pden_3528

Alternate gene names: 119386239

Gene position: 678951-679748 (Clockwise)

Preceding gene: 119386236

Following gene: 119386241

Centisome position: 39.24

GC content: 68.8

Gene sequence:

>798_bases
ATGATGGAGTTCGAGCCCTTCCTTGACGAGGATGACAAGCGCTTGGGCCAGAAGCGGTCTGCGACGATCCAGTCCATCTC
GATCGCGATGCGCTTCCTGAACATCCTGGCCACCGCACAGCGCGCGCTGCCGCTGGCCGAGCTGGCGCAATTGTCGCGGA
CCGGCCGCTCGACCGCGCATCGCTACATGCAAAGCCTGGTGAAAGAAGGGCTGGCGGTGCAGGACCCCGCCTCCAGCCGC
TACGATCTCGGCCCGGCGGCGCTGAGCATCGGCATCGCCGCCCTGCGCCGCGTCGATGCGGTCGAAATCGCCGGGACGCA
GATGAAGCAGCTGACCGAGAACCATGGGCTCAGCAGTGGCGTCTGCATCTGGACCGAGCGCGGGCCGACCATCGTGCGCT
GGTATCGCAGCGCGCAATTCTCGATCACCGCCGTCAGCCTGGGCGACATCCTGCCGGTGGACAACACCGCTTGCGGCATG
GTGTTCCAGGCCTATCTGCCCCGCGCCCAGATCGAGGCCGCGCGCCGCATCCAGCCGCGGCATTTCCGCGGCACGCCGCC
CGGCAAGGCCGTCATCGACCGCATCCGCGCCGAGGGCTGGGCCGAACTGACCAGCCACCTGCTGTCGAACGTGACCGGGC
AGGCCGCGCCGATCCTGGATGCGCAGGGCGAGCTGACCTGCGTCGTCACCACGGCGGCCGATCTGGGCAAGCTGAACTCG
CCCCAGGCGGGGCTGGCGTTGCGCGATGCCGCGCGGCTGATCAACCGCGCGACGGGCGGGCAAAGCACCTTCGAGTGA

Upstream 100 bases:

>100_bases
TCGACGGCACCCCTTTGCCATCCGCGCGACGGCGCGCTAGTGTTGCCGCGCTGCCGCACGCCCCGCACGCGAGCCAGCCG
CAGGCACAGGAGACACGGCC

Downstream 100 bases:

>100_bases
TCATCGGCGCGGCCGGGGAATCACCATCGGCCGGCCGGTCAGCGGATCGGGCTGCACCAGCGCATCAAGCCCGAACACCT
GCCGCATCAACTGGTCGGTG

Product: regulatory proteins, IclR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MMEFEPFLDEDDKRLGQKRSATIQSISIAMRFLNILATAQRALPLAELAQLSRTGRSTAHRYMQSLVKEGLAVQDPASSR
YDLGPAALSIGIAALRRVDAVEIAGTQMKQLTENHGLSSGVCIWTERGPTIVRWYRSAQFSITAVSLGDILPVDNTACGM
VFQAYLPRAQIEAARRIQPRHFRGTPPGKAVIDRIRAEGWAELTSHLLSNVTGQAAPILDAQGELTCVVTTAADLGKLNS
PQAGLALRDAARLINRATGGQSTFE

Sequences:

>Translated_265_residues
MMEFEPFLDEDDKRLGQKRSATIQSISIAMRFLNILATAQRALPLAELAQLSRTGRSTAHRYMQSLVKEGLAVQDPASSR
YDLGPAALSIGIAALRRVDAVEIAGTQMKQLTENHGLSSGVCIWTERGPTIVRWYRSAQFSITAVSLGDILPVDNTACGM
VFQAYLPRAQIEAARRIQPRHFRGTPPGKAVIDRIRAEGWAELTSHLLSNVTGQAAPILDAQGELTCVVTTAADLGKLNS
PQAGLALRDAARLINRATGGQSTFE
>Mature_265_residues
MMEFEPFLDEDDKRLGQKRSATIQSISIAMRFLNILATAQRALPLAELAQLSRTGRSTAHRYMQSLVKEGLAVQDPASSR
YDLGPAALSIGIAALRRVDAVEIAGTQMKQLTENHGLSSGVCIWTERGPTIVRWYRSAQFSITAVSLGDILPVDNTACGM
VFQAYLPRAQIEAARRIQPRHFRGTPPGKAVIDRIRAEGWAELTSHLLSNVTGQAAPILDAQGELTCVVTTAADLGKLNS
PQAGLALRDAARLINRATGGQSTFE

Specific function: May be an activator protein for the gylABX operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28694; Mature: 28694

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEFEPFLDEDDKRLGQKRSATIQSISIAMRFLNILATAQRALPLAELAQLSRTGRSTAH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
RYMQSLVKEGLAVQDPASSRYDLGPAALSIGIAALRRVDAVEIAGTQMKQLTENHGLSSG
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VCIWTERGPTIVRWYRSAQFSITAVSLGDILPVDNTACGMVFQAYLPRAQIEAARRIQPR
EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCC
HFRGTPPGKAVIDRIRAEGWAELTSHLLSNVTGQAAPILDAQGELTCVVTTAADLGKLNS
CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHCCCCC
PQAGLALRDAARLINRATGGQSTFE
CCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMEFEPFLDEDDKRLGQKRSATIQSISIAMRFLNILATAQRALPLAELAQLSRTGRSTAH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
RYMQSLVKEGLAVQDPASSRYDLGPAALSIGIAALRRVDAVEIAGTQMKQLTENHGLSSG
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VCIWTERGPTIVRWYRSAQFSITAVSLGDILPVDNTACGMVFQAYLPRAQIEAARRIQPR
EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCC
HFRGTPPGKAVIDRIRAEGWAELTSHLLSNVTGQAAPILDAQGELTCVVTTAADLGKLNS
CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHCCCCC
PQAGLALRDAARLINRATGGQSTFE
CCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3225846; 12000953 [H]