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The map label for this gene is ygiT [H]

Identifier: 119357184

GI number: 119357184

Start: 1573139

End: 1573549

Strand: Direct

Name: ygiT [H]

Synonym: Cpha266_1375

Alternate gene names: 119357184

Gene position: 1573139-1573549 (Clockwise)

Preceding gene: 119357179

Following gene: 119357187

Centisome position: 50.2

GC content: 54.26

Gene sequence:

>411_bases
ATGATCATGAATACTACACAATGTCCATCATGCGGTCATAAAGGGATGATCGACAAGGTTTTGGAAGAAACGCTCACGTA
TGGGGGTAAATCGATGACGTTGCATGACATGCACGGCAGGTTCTGCCCTGAATGTGGAGAAGGAATATGGGATGAAGAGA
GTTGCCGGCGCTATACGGAAGCTCAGGAGGGGCTGGTACGCGCGATCAAAGGCGACCCCGCAGCCGACATCCGACGCATC
CGCAGAAAGCTGAAGCTGACCCAGGCGCAGCTCGCCTCATCGTTCGGAGTCGGCAAAGTCGCATTCTCCCGTTACGAGCG
AGGGGAAACCAGGCCGCCTGCACCGTTGCTCAAGTTGCTGAAACTCATTGACCGGCACCCCGATCTGCTGAACGAGATCG
AAAAAATGTAA

Upstream 100 bases:

>100_bases
TATATAAAAGTAACGGACTCCGACGATGACCGGCCACCGGTGATTCAGTTCAAGGCCAGATAAAATAAATGCTTAACGAA
TAGAACAGCTTAATGGAAAT

Downstream 100 bases:

>100_bases
TCAGATTCCACGGTTGAACATCCTGGAACCCATTACACGACACTTTGCTTATTCTCCGTTATGGGTTCATGACCAATAGC
ATGTCCATATGAAAGAGAGG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MIMNTTQCPSCGHKGMIDKVLEETLTYGGKSMTLHDMHGRFCPECGEGIWDEESCRRYTEAQEGLVRAIKGDPAADIRRI
RRKLKLTQAQLASSFGVGKVAFSRYERGETRPPAPLLKLLKLIDRHPDLLNEIEKM

Sequences:

>Translated_136_residues
MIMNTTQCPSCGHKGMIDKVLEETLTYGGKSMTLHDMHGRFCPECGEGIWDEESCRRYTEAQEGLVRAIKGDPAADIRRI
RRKLKLTQAQLASSFGVGKVAFSRYERGETRPPAPLLKLLKLIDRHPDLLNEIEKM
>Mature_136_residues
MIMNTTQCPSCGHKGMIDKVLEETLTYGGKSMTLHDMHGRFCPECGEGIWDEESCRRYTEAQEGLVRAIKGDPAADIRRI
RRKLKLTQAQLASSFGVGKVAFSRYERGETRPPAPLLKLLKLIDRHPDLLNEIEKM

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789398, Length=129, Percent_Identity=34.1085271317829, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR022452
- InterPro:   IPR022453 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15389; Mature: 15389

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMNTTQCPSCGHKGMIDKVLEETLTYGGKSMTLHDMHGRFCPECGEGIWDEESCRRYTE
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHCCCCCCHHHHHHHHH
AQEGLVRAIKGDPAADIRRIRRKLKLTQAQLASSFGVGKVAFSRYERGETRPPAPLLKLL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH
KLIDRHPDLLNEIEKM
HHHHCCHHHHHHHHCC
>Mature Secondary Structure
MIMNTTQCPSCGHKGMIDKVLEETLTYGGKSMTLHDMHGRFCPECGEGIWDEESCRRYTE
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHCCCCCCHHHHHHHHH
AQEGLVRAIKGDPAADIRRIRRKLKLTQAQLASSFGVGKVAFSRYERGETRPPAPLLKLL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH
KLIDRHPDLLNEIEKM
HHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]