Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
---|---|
Accession | NC_008639 |
Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is 119357107
Identifier: 119357107
GI number: 119357107
Start: 1470090
End: 1471370
Strand: Direct
Name: 119357107
Synonym: Cpha266_1295
Alternate gene names: NA
Gene position: 1470090-1471370 (Clockwise)
Preceding gene: 119357106
Following gene: 119357108
Centisome position: 46.91
GC content: 48.63
Gene sequence:
>1281_bases ATGAACCAGCACACACATGACCCGCGTGAGCACATCCGGGGTATTCACCAAATTCTGATCTCCGACAAAAAGCGTATCGG ATTTCTTTTTGGTGCAGGCTCCTCTTTTGCAACAGGAGTAAGGGGGGTTAATGTTCCGGCGATTGACGAGATGACGAGGG TCATTGTTGATAAAATTGAAGCTCAATCTCCAGAGTTTGCGGCTGCCGTTAAAGAAATTCGAGCTGAAACAGAAGGCAGC GGCCTTGCATTCACGATTGAATCACTCCTATCGACCATTGAAGCTAAACGTGCGGTTATCGGTGCAGGAACGCTGAATGG CCTTGATTCCATAGGCTTTGGTGATTTGGCCAATCTCGTCAAAACCAATGTTGTAACACTTGTTTCCGTTCACGACCAGT TGCCACCAGAAGAGCGCTCAACACTGGCCCATGCGCAACTTGCAAGCTGGATTTCAAAGGCGAGGCGTCGCTTCCCTTCC GAGATTTTCACAACGAACTACGATTACCTTTTTGAAATCGCTCTCGAAGACTCAGGCATTCCCTATTTCGACGGCTTTTC TGGAAGTTATGAGCCATTTTTTTGCCCTGAAGCAGTAGAAGATGTTGAGTCATACCCTCAACTGGTAAAGCTTTGGAAAA TGCACGGTTCACTGGGATGGACCTATCGCGAGAGAGACCAAGCCGTTATTCGCGATAGAAGTGCAACCGCAGAATCAATT TTGATTTACCCATCACACCTGAAATATAGCACCACCAAAAAGCAACCTTACGTGGGCCTCATCGACCGGTTGTGTGCCTT CCTTCAGCAAGATGACGCTGTTCTCTTCACCTGCGGCTACTCATTCGGTGACAATCACATCAATGAGCGAATTGTAACAT CGCTCCGAAGAGGTGGGAACTCACATATTATCGCGATGTATTTCGACGAATTACAGAACAGCACCTGCGCACTTGCCGAT GAAACGAACAAGGTTCGCAATCTTGCCACCCGCGACACCGGCGGAAAGATGTCGGTGTACGGATGTCGTCATGCGGTGAT TGGTGGAAAATTCGGAGAGTGGCAACTGAAGGGGGAACCAAATTCTGCCGAGACCATTCGAGTGAACCAATATTTTGATG AGGATGCTGCCATGCCTGCCCAGGAGTCAGGAGAAGGCAAAGGAGATGAACGTTGGACTGGAAAGGGTCGCTTTCTTCTT CCTGACTTTCAGAAGCTCACTGAATTTCTGAACGACTTGTCATCTTCTGATGGCCCCGTCACCACACCGTTACCATCATG A
Upstream 100 bases:
>100_bases TATTTATCCCTGATTTATTTCGCTGTAATACTATATTTACTGCACGTAACCAACAGTCTCAAAAAACTCATCACAGAATA GCCTTTTACCGAAACACTCC
Downstream 100 bases:
>100_bases AGCACAATCCAACCCATATTGGCCAAGTTGAAAGCGTCAGTGGAAACTCGGTAACCATCAAAATGGTGAGTAATTATCCA TCGAACATGCCGATTGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MNQHTHDPREHIRGIHQILISDKKRIGFLFGAGSSFATGVRGVNVPAIDEMTRVIVDKIEAQSPEFAAAVKEIRAETEGS GLAFTIESLLSTIEAKRAVIGAGTLNGLDSIGFGDLANLVKTNVVTLVSVHDQLPPEERSTLAHAQLASWISKARRRFPS EIFTTNYDYLFEIALEDSGIPYFDGFSGSYEPFFCPEAVEDVESYPQLVKLWKMHGSLGWTYRERDQAVIRDRSATAESI LIYPSHLKYSTTKKQPYVGLIDRLCAFLQQDDAVLFTCGYSFGDNHINERIVTSLRRGGNSHIIAMYFDELQNSTCALAD ETNKVRNLATRDTGGKMSVYGCRHAVIGGKFGEWQLKGEPNSAETIRVNQYFDEDAAMPAQESGEGKGDERWTGKGRFLL PDFQKLTEFLNDLSSSDGPVTTPLPS
Sequences:
>Translated_426_residues MNQHTHDPREHIRGIHQILISDKKRIGFLFGAGSSFATGVRGVNVPAIDEMTRVIVDKIEAQSPEFAAAVKEIRAETEGS GLAFTIESLLSTIEAKRAVIGAGTLNGLDSIGFGDLANLVKTNVVTLVSVHDQLPPEERSTLAHAQLASWISKARRRFPS EIFTTNYDYLFEIALEDSGIPYFDGFSGSYEPFFCPEAVEDVESYPQLVKLWKMHGSLGWTYRERDQAVIRDRSATAESI LIYPSHLKYSTTKKQPYVGLIDRLCAFLQQDDAVLFTCGYSFGDNHINERIVTSLRRGGNSHIIAMYFDELQNSTCALAD ETNKVRNLATRDTGGKMSVYGCRHAVIGGKFGEWQLKGEPNSAETIRVNQYFDEDAAMPAQESGEGKGDERWTGKGRFLL PDFQKLTEFLNDLSSSDGPVTTPLPS >Mature_426_residues MNQHTHDPREHIRGIHQILISDKKRIGFLFGAGSSFATGVRGVNVPAIDEMTRVIVDKIEAQSPEFAAAVKEIRAETEGS GLAFTIESLLSTIEAKRAVIGAGTLNGLDSIGFGDLANLVKTNVVTLVSVHDQLPPEERSTLAHAQLASWISKARRRFPS EIFTTNYDYLFEIALEDSGIPYFDGFSGSYEPFFCPEAVEDVESYPQLVKLWKMHGSLGWTYRERDQAVIRDRSATAESI LIYPSHLKYSTTKKQPYVGLIDRLCAFLQQDDAVLFTCGYSFGDNHINERIVTSLRRGGNSHIIAMYFDELQNSTCALAD ETNKVRNLATRDTGGKMSVYGCRHAVIGGKFGEWQLKGEPNSAETIRVNQYFDEDAAMPAQESGEGKGDERWTGKGRFLL PDFQKLTEFLNDLSSSDGPVTTPLPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47235; Mature: 47235
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQHTHDPREHIRGIHQILISDKKRIGFLFGAGSSFATGVRGVNVPAIDEMTRVIVDKIE CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHH AQSPEFAAAVKEIRAETEGSGLAFTIESLLSTIEAKRAVIGAGTLNGLDSIGFGDLANLV CCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHH KTNVVTLVSVHDQLPPEERSTLAHAQLASWISKARRRFPSEIFTTNYDYLFEIALEDSGI HHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCC PYFDGFSGSYEPFFCPEAVEDVESYPQLVKLWKMHGSLGWTYRERDQAVIRDRSATAESI CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCHHHHHCCCCCCCEE LIYPSHLKYSTTKKQPYVGLIDRLCAFLQQDDAVLFTCGYSFGDNHINERIVTSLRRGGN EEEECCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC SHIIAMYFDELQNSTCALADETNKVRNLATRDTGGKMSVYGCRHAVIGGKFGEWQLKGEP CCEEEEEEHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCEEECCCC NSAETIRVNQYFDEDAAMPAQESGEGKGDERWTGKGRFLLPDFQKLTEFLNDLSSSDGPV CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCC TTPLPS CCCCCC >Mature Secondary Structure MNQHTHDPREHIRGIHQILISDKKRIGFLFGAGSSFATGVRGVNVPAIDEMTRVIVDKIE CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHH AQSPEFAAAVKEIRAETEGSGLAFTIESLLSTIEAKRAVIGAGTLNGLDSIGFGDLANLV CCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHH KTNVVTLVSVHDQLPPEERSTLAHAQLASWISKARRRFPSEIFTTNYDYLFEIALEDSGI HHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCC PYFDGFSGSYEPFFCPEAVEDVESYPQLVKLWKMHGSLGWTYRERDQAVIRDRSATAESI CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCHHHHHCCCCCCCEE LIYPSHLKYSTTKKQPYVGLIDRLCAFLQQDDAVLFTCGYSFGDNHINERIVTSLRRGGN EEEECCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC SHIIAMYFDELQNSTCALADETNKVRNLATRDTGGKMSVYGCRHAVIGGKFGEWQLKGEP CCEEEEEEHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCEEECCCC NSAETIRVNQYFDEDAAMPAQESGEGKGDERWTGKGRFLLPDFQKLTEFLNDLSSSDGPV CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCC TTPLPS CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA