| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is rbpE [H]
Identifier: 119357086
GI number: 119357086
Start: 1452109
End: 1452381
Strand: Direct
Name: rbpE [H]
Synonym: Cpha266_1273
Alternate gene names: 119357086
Gene position: 1452109-1452381 (Clockwise)
Preceding gene: 119357085
Following gene: 119357091
Centisome position: 46.34
GC content: 45.79
Gene sequence:
>273_bases ATGAATATTTACATTGGCAATTTGGCTTACACGGTTTCCGAAGATGATCTCCGTGACGCCTTCTCCCAGTTCGGGCAGGT CGATAGCGCTAACATCATCAACGACAAATTTTCTGGCCGTTCCAAAGGATTCGGTTTCATTGAAATGTCTAATGACAGCG AAGCTCGCGAAGCTATCGAATCAATGAATGATCAGGATTTGAAAGGTCGCACCATCAAGGTGAACGAAGCCAAACCTCGC GAAGAAAGATCAGAGAGACGGGACCGCTATTAA
Upstream 100 bases:
>100_bases TGTCAGTCAATGGTTGACTGATCGCTATTCAGGTAATTTGTGCTTTGGTTACTTGTCGGTATCTCTTTTTTTCAATGCAC ATGTACTATGAGAATTAATA
Downstream 100 bases:
>100_bases GTTTTAAGCAATTCTTGCTCCCAAGCCAGACAAACACTCGTTTTGTCTGGCTTTTTTTTTGCCAGGGAAAACGAACCATT TTCGGAAACGACTCCTCATG
Product: RNP-1 like RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 90; Mature: 90
Protein sequence:
>90_residues MNIYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIESMNDQDLKGRTIKVNEAKPR EERSERRDRY
Sequences:
>Translated_90_residues MNIYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIESMNDQDLKGRTIKVNEAKPR EERSERRDRY >Mature_90_residues MNIYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIESMNDQDLKGRTIKVNEAKPR EERSERRDRY
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI4757926, Length=84, Percent_Identity=39.2857142857143, Blast_Score=74, Evalue=3e-14, Organism=Homo sapiens, GI35493811, Length=84, Percent_Identity=39.2857142857143, Blast_Score=74, Evalue=3e-14, Organism=Homo sapiens, GI116734694, Length=80, Percent_Identity=40, Blast_Score=73, Evalue=6e-14, Organism=Homo sapiens, GI116734696, Length=80, Percent_Identity=40, Blast_Score=73, Evalue=6e-14, Organism=Homo sapiens, GI116734698, Length=80, Percent_Identity=40, Blast_Score=72, Evalue=7e-14, Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=38.2716049382716, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI14149675, Length=84, Percent_Identity=30.952380952381, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI185135971, Length=88, Percent_Identity=38.6363636363636, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI188219593, Length=85, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI188219591, Length=85, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI4557493, Length=84, Percent_Identity=30.952380952381, Blast_Score=66, Evalue=5e-12, Organism=Homo sapiens, GI4507499, Length=89, Percent_Identity=33.7078651685393, Blast_Score=66, Evalue=7e-12, Organism=Homo sapiens, GI77695912, Length=89, Percent_Identity=33.7078651685393, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI291084655, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI4504715, Length=88, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI208431836, Length=88, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI208431833, Length=88, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI45238849, Length=88, Percent_Identity=35.2272727272727, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI5803137, Length=75, Percent_Identity=37.3333333333333, Blast_Score=63, Evalue=6e-11, Organism=Homo sapiens, GI46367787, Length=88, Percent_Identity=35.2272727272727, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=37.5, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=39.4736842105263, Blast_Score=68, Evalue=9e-13, Organism=Caenorhabditis elegans, GI32564504, Length=90, Percent_Identity=37.7777777777778, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI32564506, Length=90, Percent_Identity=37.7777777777778, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17531963, Length=90, Percent_Identity=37.7777777777778, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17531965, Length=90, Percent_Identity=37.7777777777778, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=33.7662337662338, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25141353, Length=81, Percent_Identity=41.9753086419753, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17510027, Length=81, Percent_Identity=41.9753086419753, Blast_Score=65, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193209459, Length=88, Percent_Identity=34.0909090909091, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510025, Length=73, Percent_Identity=43.8356164383562, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17539498, Length=86, Percent_Identity=40.6976744186046, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567133, Length=83, Percent_Identity=37.3493975903614, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17567131, Length=83, Percent_Identity=37.3493975903614, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17532863, Length=89, Percent_Identity=29.2134831460674, Blast_Score=62, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324312, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6321013, Length=82, Percent_Identity=40.2439024390244, Blast_Score=60, Evalue=9e-11, Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=41.25, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI221330652, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI62471589, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI19549692, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI19549690, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI221330653, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI19549688, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI19549694, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI17647301, Length=77, Percent_Identity=46.7532467532467, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI17137710, Length=84, Percent_Identity=34.5238095238095, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI161078704, Length=86, Percent_Identity=34.8837209302326, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI24650782, Length=84, Percent_Identity=34.5238095238095, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161078702, Length=84, Percent_Identity=34.5238095238095, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI281362714, Length=84, Percent_Identity=34.5238095238095, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654797, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI45552715, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI24654810, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI24654800, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI24654793, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI24654807, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI17136378, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI24654804, Length=83, Percent_Identity=39.7590361445783, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 10345; Mature: 10345
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIE CEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH SMNDQDLKGRTIKVNEAKPREERSERRDRY CCCCCCCCCCEEEECCCCCHHHHHHHCCCC >Mature Secondary Structure MNIYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIE CEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH SMNDQDLKGRTIKVNEAKPREERSERRDRY CCCCCCCCCCEEEECCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]