Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
---|---|
Accession | NC_008639 |
Length | 3,133,902 |
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The map label for this gene is trx2 [H]
Identifier: 119357012
GI number: 119357012
Start: 1357272
End: 1357601
Strand: Direct
Name: trx2 [H]
Synonym: Cpha266_1196
Alternate gene names: 119357012
Gene position: 1357272-1357601 (Clockwise)
Preceding gene: 119357011
Following gene: 119357013
Centisome position: 43.31
GC content: 43.94
Gene sequence:
>330_bases ATGAGCGGAAAATATCTTGTCGCTACAGATCAGAATTTCAAAACCGAAATACTTGATTCAGATAAAGTTGCACTTGTGGA TTTCTGGGCAGCCTGGTGCGGACCTTGCATGATGCTTGGCCCTGTTATCGAAGAACTTGCCGGCGATTATGAAGGCAAAG CGATTGTTGCGAAACTCAATGTTGATGATAATCCGAATACAGCTTCGCAGTATGGCATAAGAAGCATTCCTACCATGCTG CTTATCAAGAACGGCAAGGTTGTTGATCAGATGGTAGGCGCTATGCCGAAAAACATGATTGCAAAAAAAATCGACGAACA CCTTGCCTGA
Upstream 100 bases:
>100_bases AGCGCTCAGGATAGTAAAATGTTTTTTTTTTATTAGCTTCATTACTTATTTCTCAATGCATTACCTGAAAGAAAACTTCT AATTTTAAACAAAAAGAACT
Downstream 100 bases:
>100_bases ATCTGAAAAGATCGCTTTTTTTTCAGCACAGCACTTCTTACGGCGGTCATGACGTGAGCGGCAGCACCTCTCCGTTATTG AAACATCTGCATGATCGACT
Product: thioredoxin
Products: NA
Alternate protein names: Trx-2 [H]
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MSGKYLVATDQNFKTEILDSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIVAKLNVDDNPNTASQYGIRSIPTML LIKNGKVVDQMVGAMPKNMIAKKIDEHLA
Sequences:
>Translated_109_residues MSGKYLVATDQNFKTEILDSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIVAKLNVDDNPNTASQYGIRSIPTML LIKNGKVVDQMVGAMPKNMIAKKIDEHLA >Mature_108_residues SGKYLVATDQNFKTEILDSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIVAKLNVDDNPNTASQYGIRSIPTMLL IKNGKVVDQMVGAMPKNMIAKKIDEHLA
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=82, Percent_Identity=41.4634146341463, Blast_Score=86, Evalue=6e-18, Organism=Escherichia coli, GI87082331, Length=109, Percent_Identity=52.2935779816514, Blast_Score=127, Evalue=2e-31, Organism=Escherichia coli, GI1788936, Length=108, Percent_Identity=37.962962962963, Blast_Score=90, Evalue=4e-20, Organism=Escherichia coli, GI87081747, Length=84, Percent_Identity=39.2857142857143, Blast_Score=73, Evalue=5e-15, Organism=Caenorhabditis elegans, GI212646193, Length=99, Percent_Identity=35.3535353535354, Blast_Score=77, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17507705, Length=91, Percent_Identity=36.2637362637363, Blast_Score=76, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17510299, Length=107, Percent_Identity=37.3831775700935, Blast_Score=72, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71980562, Length=89, Percent_Identity=32.5842696629214, Blast_Score=72, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71980565, Length=89, Percent_Identity=32.5842696629214, Blast_Score=71, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17509965, Length=89, Percent_Identity=37.0786516853933, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71998175, Length=101, Percent_Identity=33.6633663366337, Blast_Score=66, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6321648, Length=96, Percent_Identity=38.5416666666667, Blast_Score=76, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323072, Length=77, Percent_Identity=45.4545454545455, Blast_Score=75, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6319925, Length=85, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=3e-12, Organism=Drosophila melanogaster, GI24664269, Length=104, Percent_Identity=38.4615384615385, Blast_Score=91, Evalue=1e-19, Organism=Drosophila melanogaster, GI28573567, Length=96, Percent_Identity=35.4166666666667, Blast_Score=85, Evalue=8e-18, Organism=Drosophila melanogaster, GI24639826, Length=91, Percent_Identity=39.5604395604396, Blast_Score=84, Evalue=1e-17, Organism=Drosophila melanogaster, GI17648013, Length=80, Percent_Identity=38.75, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI24583090, Length=80, Percent_Identity=38.75, Blast_Score=74, Evalue=1e-14, Organism=Drosophila melanogaster, GI17530795, Length=85, Percent_Identity=35.2941176470588, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI24658597, Length=104, Percent_Identity=32.6923076923077, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI21358065, Length=96, Percent_Identity=32.2916666666667, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24639068, Length=103, Percent_Identity=32.0388349514563, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11917; Mature: 11786
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 6.4 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKYLVATDQNFKTEILDSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIVAKLN CCCCEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE VDDNPNTASQYGIRSIPTMLLIKNGKVVDQMVGAMPKNMIAKKIDEHLA CCCCCCCHHHCCHHCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure SGKYLVATDQNFKTEILDSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIVAKLN CCCEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE VDDNPNTASQYGIRSIPTMLLIKNGKVVDQMVGAMPKNMIAKKIDEHLA CCCCCCCHHHCCHHCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12093901 [H]