| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is hsdR [H]
Identifier: 119356948
GI number: 119356948
Start: 1276385
End: 1279183
Strand: Direct
Name: hsdR [H]
Synonym: Cpha266_1128
Alternate gene names: 119356948
Gene position: 1276385-1279183 (Clockwise)
Preceding gene: 119356947
Following gene: 119356949
Centisome position: 40.73
GC content: 50.48
Gene sequence:
>2799_bases ATGAAAAACGAGCAGCAAACCCGCATCGAATTGATTGACAGGATGTTACTGCAGGCAAGCTGGAACGTGAACGATCCTCT CCAGGTTGTGGAGGAGTTCGATATTCTTGTCGGTTTGCCCGAAGGGGTGCAGGAACCCCGCACCTCTTATGAAGGGCATC AGTTCAGCGACTATGTGCTGCTTGGAAAGGATGGCAAGCCTCTTGCCGTCGTTGAAGCAAAAAAAACAAGTAGGGATGCA GCCATTGGCCGTGAACAGGCCAAGCAGTATTGCTGCAATATCCGGAAACAGTTGGGCGTTGAGCTTCCATTCTGTTTTTA TACCAATGGCCTTGAGACCTTTTTCTGGGATATCGACAACTACCCTCCACGAAAGGTAATCGGCTTTCCAACCCGTGACG ACCTTGAGCGGTTCAGCTATATCCGCAGAAGCCGCAAGCCTCTCACCGGGGAACTGATCAATACAGCCATTGCCGGACGC GACTATCAGATTCGCGCCATTCGATCCGTCCTCGAAGCCATTGAGCAGAAAAAGCGGGACTTTCTGCTCGTTATGGCCAC CGGAACCGGTAAAACCCGCACAGCTATCGCCATGGTTGACGCCCTGATGCGTGGCGGACATGCCGAAAAAATTCTTTTTC TGGTCGATCGTATTGCCTTGCGTGAGCAGGCGCTCTCCGCCTTCAAGGAGCATTTGCCCCACGAACCTCGCTGGCCAAAC AGCGGTGAAAAGGTTTTTGCCAAAGATCGCCGCATCTACATTGCCACCTACCCAACGATGCTCAACCTCATCAGGGATGA ATCATCGTACCTCTCACCCTGGTTTTTTGACTTTATCGTTATTGATGAGAGCCACCGCTCCATCTACAACACCTGGGGGG AAATCCTCGATTACTTCAAAACAATCACCCTGGGGCTGACGGCAACCCCAACCGATATTCTTGACCACAACACCTTCAAC CTCTTTCACTGCGAGAATGGCCTTCCAACCTTTGCCTATACCTATGAAGAGGCAGTGAACAATATTCCTCCATATCTGTG CAATTTCCAGGTGATGAAAATCCAGACGAAATTCCAGATGGAGGGTATCAGCAAGCGGACGATCTCCCTTGAAGATCAGA AAAAACTGATTCTCGAAGGCAAGGATATCGAAGAGATCAATTTTGAAGGGACGCAGCTTGAAAAGCAGGTGATCAATCGG GGGACGAACAGCCTGATTGTCAAAGAGTTCATGGAGGAGTGCATCAAAGACCAGAACGGTGTTCTTCCCGGAAAAACCAT ATTCTTCTGCGCCACCATAGCGCATGCCCGCAGAATTGAGGAGATATTCGACCGGCTCTACCCGGAATACAAAGGCGAAC TTGCCAAGGTTCTTGTCTCTGATGACCCCCGAGTCTACGGCAAGGGAGGCTTGCTCGATCAGTTCACGAACAGCGATATG CCCCGCATCGCCATCAGTGTTGACATGCTCGATACCGGTATAGACATCCGGGAACTCGTTAATCTCGTCTTTGTCAAGCC GGTCTACTCCTACACAAAATTCTGGCAGATGATTGGCCGAGGGACACGGCTTCTTGAACCCGCTAAAATCAAGCCATGGT GCACCAAAAAAGAGCTTTTCCTGATTCTTGACTGCTGGGACAACTTTGAGTACTTCAAGCTTCAGCCCAAAGGCAAAGAG CTGACACAGCAACTCCCGCTTCCGGTGAAACTGTTCGGGCTGCGGCTCGACAAAATTGAATATGCGCTCTCAATCGGTAA CACGGCCATTGCTGAGCGGGAAACGGTAAAACTGCGTAAACAGATTGCCGGGCTTCCGCATACCTCAGTGGTGATCAAAG AGGCCGCATCGCTTCTTCACCCTCTCGAAGAGGAGAACTTCTGGATATCTCTCACACCCCAAAAGCTGGAAAATCTGAGA AGCGGGATCAAACCGCTCTTCAGAACCGTGTCGGATGCCGACTTTAAAGCCATGCGTTTTGAGCGGGACGTTCTGGAGAG TTCACTGGCACAACTTCGCGACCAGAAAGAGCGCTACGGCACGCTTAACGACGGCATTGCCGAGCAGATCAGCCAGCTTC CCCTGAGCGTCGGCTTTGTGAAACAGGAAGAGGAACTGATACGGGCCGCTCAAACGAAACACTTCTGGAACAAGGCTACG GAAGAGAGCTTCGACGAACTGATTGAAAAACTCTCGCCGCTGATGAAATTTCGCGAGCCTGATAGCGGCGCAATCGGTCA AGTATACCTGAACTTGCAGGATCTTCTGCACCATAAAGAGATGGTTGAATTCGGCCCCCGGAATGAGGCCGTCAGCATTA CCCGCTACCGCGAAATGGTTGAATTGCTCATTACCGAGCTGACAAAACAGAATCCGATTCTCTCCAGAATCAAGGAGGGC AAAGAGATTTCGCCTGAAGAGGCCGCTGAACTTGCGGAAATGCTCCACGAAGAGCATCCGCACATCACCGAGGATCTGTT GCGCTCGGTCTATAACAACCGCAAGGCCCATTTCATCCAGTTTATCCGCCATATTCTCGGGCTCGAAATTCTCAAGAGTT TTCCTGAAACGGTTGCCGATGCTTTTGATCAGTTTATCAAAGAGCACTCAACCTTCTCCAGCCGCCAACTCGACTTTTTA AACCTCCTCAAAAACGTTCTTGTAGAACGTGAAAAGATTGAAAAAAGAGACCTGATCAATGCCCCATTTACGGTCATACA CCCGAAAGGCATTCGCGGAGTCTTCAATCCGGCTGAAATCAATGAAATTCTGGCTCTGGCCCGGCAACTTGCAGCATAA
Upstream 100 bases:
>100_bases CCATGCCACATAACCGCACTATTCCTGTGTACTTCTGAAAGTATGGCGTATATTGAGCGTCTATCCGGATTGTTAATGTG ATGCAACCTGTCAACATGCC
Downstream 100 bases:
>100_bases CATGACAGAAAATAACCGCATCGAATACAAGCGCGAGCTGACTGACAGGCTTGAGAAAGAGGTCATCGCATTTCTGAACT ATCATGATGGTGGCATTATC
Product: type III restriction enzyme, res subunit
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 932; Mature: 932
Protein sequence:
>932_residues MKNEQQTRIELIDRMLLQASWNVNDPLQVVEEFDILVGLPEGVQEPRTSYEGHQFSDYVLLGKDGKPLAVVEAKKTSRDA AIGREQAKQYCCNIRKQLGVELPFCFYTNGLETFFWDIDNYPPRKVIGFPTRDDLERFSYIRRSRKPLTGELINTAIAGR DYQIRAIRSVLEAIEQKKRDFLLVMATGTGKTRTAIAMVDALMRGGHAEKILFLVDRIALREQALSAFKEHLPHEPRWPN SGEKVFAKDRRIYIATYPTMLNLIRDESSYLSPWFFDFIVIDESHRSIYNTWGEILDYFKTITLGLTATPTDILDHNTFN LFHCENGLPTFAYTYEEAVNNIPPYLCNFQVMKIQTKFQMEGISKRTISLEDQKKLILEGKDIEEINFEGTQLEKQVINR GTNSLIVKEFMEECIKDQNGVLPGKTIFFCATIAHARRIEEIFDRLYPEYKGELAKVLVSDDPRVYGKGGLLDQFTNSDM PRIAISVDMLDTGIDIRELVNLVFVKPVYSYTKFWQMIGRGTRLLEPAKIKPWCTKKELFLILDCWDNFEYFKLQPKGKE LTQQLPLPVKLFGLRLDKIEYALSIGNTAIAERETVKLRKQIAGLPHTSVVIKEAASLLHPLEEENFWISLTPQKLENLR SGIKPLFRTVSDADFKAMRFERDVLESSLAQLRDQKERYGTLNDGIAEQISQLPLSVGFVKQEEELIRAAQTKHFWNKAT EESFDELIEKLSPLMKFREPDSGAIGQVYLNLQDLLHHKEMVEFGPRNEAVSITRYREMVELLITELTKQNPILSRIKEG KEISPEEAAELAEMLHEEHPHITEDLLRSVYNNRKAHFIQFIRHILGLEILKSFPETVADAFDQFIKEHSTFSSRQLDFL NLLKNVLVEREKIEKRDLINAPFTVIHPKGIRGVFNPAEINEILALARQLAA
Sequences:
>Translated_932_residues MKNEQQTRIELIDRMLLQASWNVNDPLQVVEEFDILVGLPEGVQEPRTSYEGHQFSDYVLLGKDGKPLAVVEAKKTSRDA AIGREQAKQYCCNIRKQLGVELPFCFYTNGLETFFWDIDNYPPRKVIGFPTRDDLERFSYIRRSRKPLTGELINTAIAGR DYQIRAIRSVLEAIEQKKRDFLLVMATGTGKTRTAIAMVDALMRGGHAEKILFLVDRIALREQALSAFKEHLPHEPRWPN SGEKVFAKDRRIYIATYPTMLNLIRDESSYLSPWFFDFIVIDESHRSIYNTWGEILDYFKTITLGLTATPTDILDHNTFN LFHCENGLPTFAYTYEEAVNNIPPYLCNFQVMKIQTKFQMEGISKRTISLEDQKKLILEGKDIEEINFEGTQLEKQVINR GTNSLIVKEFMEECIKDQNGVLPGKTIFFCATIAHARRIEEIFDRLYPEYKGELAKVLVSDDPRVYGKGGLLDQFTNSDM PRIAISVDMLDTGIDIRELVNLVFVKPVYSYTKFWQMIGRGTRLLEPAKIKPWCTKKELFLILDCWDNFEYFKLQPKGKE LTQQLPLPVKLFGLRLDKIEYALSIGNTAIAERETVKLRKQIAGLPHTSVVIKEAASLLHPLEEENFWISLTPQKLENLR SGIKPLFRTVSDADFKAMRFERDVLESSLAQLRDQKERYGTLNDGIAEQISQLPLSVGFVKQEEELIRAAQTKHFWNKAT EESFDELIEKLSPLMKFREPDSGAIGQVYLNLQDLLHHKEMVEFGPRNEAVSITRYREMVELLITELTKQNPILSRIKEG KEISPEEAAELAEMLHEEHPHITEDLLRSVYNNRKAHFIQFIRHILGLEILKSFPETVADAFDQFIKEHSTFSSRQLDFL NLLKNVLVEREKIEKRDLINAPFTVIHPKGIRGVFNPAEINEILALARQLAA >Mature_932_residues MKNEQQTRIELIDRMLLQASWNVNDPLQVVEEFDILVGLPEGVQEPRTSYEGHQFSDYVLLGKDGKPLAVVEAKKTSRDA AIGREQAKQYCCNIRKQLGVELPFCFYTNGLETFFWDIDNYPPRKVIGFPTRDDLERFSYIRRSRKPLTGELINTAIAGR DYQIRAIRSVLEAIEQKKRDFLLVMATGTGKTRTAIAMVDALMRGGHAEKILFLVDRIALREQALSAFKEHLPHEPRWPN SGEKVFAKDRRIYIATYPTMLNLIRDESSYLSPWFFDFIVIDESHRSIYNTWGEILDYFKTITLGLTATPTDILDHNTFN LFHCENGLPTFAYTYEEAVNNIPPYLCNFQVMKIQTKFQMEGISKRTISLEDQKKLILEGKDIEEINFEGTQLEKQVINR GTNSLIVKEFMEECIKDQNGVLPGKTIFFCATIAHARRIEEIFDRLYPEYKGELAKVLVSDDPRVYGKGGLLDQFTNSDM PRIAISVDMLDTGIDIRELVNLVFVKPVYSYTKFWQMIGRGTRLLEPAKIKPWCTKKELFLILDCWDNFEYFKLQPKGKE LTQQLPLPVKLFGLRLDKIEYALSIGNTAIAERETVKLRKQIAGLPHTSVVIKEAASLLHPLEEENFWISLTPQKLENLR SGIKPLFRTVSDADFKAMRFERDVLESSLAQLRDQKERYGTLNDGIAEQISQLPLSVGFVKQEEELIRAAQTKHFWNKAT EESFDELIEKLSPLMKFREPDSGAIGQVYLNLQDLLHHKEMVEFGPRNEAVSITRYREMVELLITELTKQNPILSRIKEG KEISPEEAAELAEMLHEEHPHITEDLLRSVYNNRKAHFIQFIRHILGLEILKSFPETVADAFDQFIKEHSTFSSRQLDFL NLLKNVLVEREKIEKRDLINAPFTVIHPKGIRGVFNPAEINEILALARQLAA
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=637, Percent_Identity=28.1004709576138, Blast_Score=155, Evalue=1e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 107478; Mature: 107478
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNEQQTRIELIDRMLLQASWNVNDPLQVVEEFDILVGLPEGVQEPRTSYEGHQFSDYVL CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEE LGKDGKPLAVVEAKKTSRDAAIGREQAKQYCCNIRKQLGVELPFCFYTNGLETFFWDIDN ECCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHEEEECCC YPPRKVIGFPTRDDLERFSYIRRSRKPLTGELINTAIAGRDYQIRAIRSVLEAIEQKKRD CCCCCEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC FLLVMATGTGKTRTAIAMVDALMRGGHAEKILFLVDRIALREQALSAFKEHLPHEPRWPN EEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SGEKVFAKDRRIYIATYPTMLNLIRDESSYLSPWFFDFIVIDESHRSIYNTWGEILDYFK CCCEEEECCCEEEEEECHHHHHHHHCCCHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHH TITLGLTATPTDILDHNTFNLFHCENGLPTFAYTYEEAVNNIPPYLCNFQVMKIQTKFQM HHHHCCCCCCHHHHCCCCEEEEEECCCCCCCEEEHHHHHCCCCCCHHCEEEEEEEHHHHH EGISKRTISLEDQKKLILEGKDIEEINFEGTQLEKQVINRGTNSLIVKEFMEECIKDQNG CCCCCCEECCCCCHHHEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC VLPGKTIFFCATIAHARRIEEIFDRLYPEYKGELAKVLVSDDPRVYGKGGLLDQFTNSDM CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHEECCCCCEEECCCCHHHHCCCCC PRIAISVDMLDTGIDIRELVNLVFVKPVYSYTKFWQMIGRGTRLLEPAKIKPWCTKKELF CEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE LILDCWDNFEYFKLQPKGKELTQQLPLPVKLFGLRLDKIEYALSIGNTAIAERETVKLRK EEEEECCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH QIAGLPHTSVVIKEAASLLHPLEEENFWISLTPQKLENLRSGIKPLFRTVSDADFKAMRF HHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHH ERDVLESSLAQLRDQKERYGTLNDGIAEQISQLPLSVGFVKQEEELIRAAQTKHFWNKAT HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHH EESFDELIEKLSPLMKFREPDSGAIGQVYLNLQDLLHHKEMVEFGPRNEAVSITRYREMV HHHHHHHHHHHHHHHHCCCCCCCCHHHHEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHH ELLITELTKQNPILSRIKEGKEISPEEAAELAEMLHEEHPHITEDLLRSVYNNRKAHFIQ HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH FIRHILGLEILKSFPETVADAFDQFIKEHSTFSSRQLDFLNLLKNVLVEREKIEKRDLIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC APFTVIHPKGIRGVFNPAEINEILALARQLAA CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKNEQQTRIELIDRMLLQASWNVNDPLQVVEEFDILVGLPEGVQEPRTSYEGHQFSDYVL CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEE LGKDGKPLAVVEAKKTSRDAAIGREQAKQYCCNIRKQLGVELPFCFYTNGLETFFWDIDN ECCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHEEEECCC YPPRKVIGFPTRDDLERFSYIRRSRKPLTGELINTAIAGRDYQIRAIRSVLEAIEQKKRD CCCCCEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC FLLVMATGTGKTRTAIAMVDALMRGGHAEKILFLVDRIALREQALSAFKEHLPHEPRWPN EEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SGEKVFAKDRRIYIATYPTMLNLIRDESSYLSPWFFDFIVIDESHRSIYNTWGEILDYFK CCCEEEECCCEEEEEECHHHHHHHHCCCHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHH TITLGLTATPTDILDHNTFNLFHCENGLPTFAYTYEEAVNNIPPYLCNFQVMKIQTKFQM HHHHCCCCCCHHHHCCCCEEEEEECCCCCCCEEEHHHHHCCCCCCHHCEEEEEEEHHHHH EGISKRTISLEDQKKLILEGKDIEEINFEGTQLEKQVINRGTNSLIVKEFMEECIKDQNG CCCCCCEECCCCCHHHEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC VLPGKTIFFCATIAHARRIEEIFDRLYPEYKGELAKVLVSDDPRVYGKGGLLDQFTNSDM CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHEECCCCCEEECCCCHHHHCCCCC PRIAISVDMLDTGIDIRELVNLVFVKPVYSYTKFWQMIGRGTRLLEPAKIKPWCTKKELF CEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE LILDCWDNFEYFKLQPKGKELTQQLPLPVKLFGLRLDKIEYALSIGNTAIAERETVKLRK EEEEECCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH QIAGLPHTSVVIKEAASLLHPLEEENFWISLTPQKLENLRSGIKPLFRTVSDADFKAMRF HHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHH ERDVLESSLAQLRDQKERYGTLNDGIAEQISQLPLSVGFVKQEEELIRAAQTKHFWNKAT HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHH EESFDELIEKLSPLMKFREPDSGAIGQVYLNLQDLLHHKEMVEFGPRNEAVSITRYREMV HHHHHHHHHHHHHHHHCCCCCCCCHHHHEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHH ELLITELTKQNPILSRIKEGKEISPEEAAELAEMLHEEHPHITEDLLRSVYNNRKAHFIQ HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH FIRHILGLEILKSFPETVADAFDQFIKEHSTFSSRQLDFLNLLKNVLVEREKIEKRDLIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC APFTVIHPKGIRGVFNPAEINEILALARQLAA CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]