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The map label for this gene is yggS [C]

Identifier: 118581657

GI number: 118581657

Start: 3577235

End: 3577921

Strand: Direct

Name: yggS [C]

Synonym: Ppro_3256

Alternate gene names: 118581657

Gene position: 3577235-3577921 (Clockwise)

Preceding gene: 118581656

Following gene: 118581660

Centisome position: 89.25

GC content: 64.77

Gene sequence:

>687_bases
ATGTCCATAGCCGAACGACTGGCAGAGGTGAGGGAGGAGATCCGGACCGCGGCGCTGGCCGCCGGCCGCGATCCGGAAGG
GGTACGGCTGGTGGCGGTGTCCAAGACCCGTCCCGCGGCCGATGTTATCGATGCTTTCCGGGCCGGGCAGATCATCTTCG
GCGAGAACTACGTCCAGGAGTTGCGGGCCAAGGCGCCTGAGGTGAAGAAGTCGGTGGAGTGGCATTTCATCGGCCATTTG
CAGAGCAACAAGGTCAGGCAGATCGCCGGCCTGGTGAGCATGATCCACTCCGTCGACCGCCTCTCCCTGGCCGAGGAGAT
CAGCCGCCAATGGGGTCGTCTCTCCCTGAGCTGCGACATACTGGTGCAGGTCAACATCAGCGGCGAGATCACCAAGTCGG
GCACGACAGCCGAAAACGCCCTGCAGCTGGTGCGCGACATCGCGGTGCTGCCCAACCTGCGCATCAGGGGACTGATGACC
ATGCCCCCCTTCTTCGACGATCCCGAGGCCGCACGCCCCTTCTTCGCCGGCCTGCGCCAACTGGCCGAACTGATCGACAG
CGAGGATATCCCGGGGGTGGAGATGAAAGAACTCTCCATGGGCATGTCGGGAGACTTCGAGGCCGCCATCGGTGAGGGCG
CCACCCTGGTGCGGGTCGGAACCGCCATCTTCGGCGAGCGTCGGTAG

Upstream 100 bases:

>100_bases
CCGTGCGCTGCTCTGACAGGGGATCAATGCTTACCCTAAGTCCGTTGGCGCCTTCCGGACGGCAGGTATTCAGAGCAAAA
TGAGTCGAATGGAGTTTGTT

Downstream 100 bases:

>100_bases
TACAGAGGCGCAGCATTCAAAAAAACGGCAGGCGGGCGGTTACCAGACAGCAACGGACCAGCTTCCGAAGCGAATAACCG
GACAGCCTTGCCAGCCGCGT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQELRAKAPEVKKSVEWHFIGHL
QSNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSCDILVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMT
MPPFFDDPEAARPFFAGLRQLAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGERR

Sequences:

>Translated_228_residues
MSIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQELRAKAPEVKKSVEWHFIGHL
QSNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSCDILVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMT
MPPFFDDPEAARPFFAGLRQLAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGERR
>Mature_227_residues
SIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQELRAKAPEVKKSVEWHFIGHLQ
SNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSCDILVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMTM
PPFFDDPEAARPFFAGLRQLAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGERR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=235, Percent_Identity=41.2765957446808, Blast_Score=147, Evalue=5e-36,
Organism=Escherichia coli, GI1789321, Length=236, Percent_Identity=43.6440677966102, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17533025, Length=222, Percent_Identity=37.3873873873874, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=231, Percent_Identity=34.6320346320346, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=41.3953488372093, Blast_Score=144, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24967; Mature: 24836

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEECHHHHHH
LRAKAPEVKKSVEWHFIGHLQSNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSCDI
HHHCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
LVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMTMPPFFDDPEAARPFFAGLRQ
EEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHCCHHHHHHHH
LAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGERR
HHHHHCCCCCCCCHHHHHHCCCCCCCHHHHCCCCEEEEEHHHHHCCCC
>Mature Secondary Structure 
SIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQE
CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEECHHHHHH
LRAKAPEVKKSVEWHFIGHLQSNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSCDI
HHHCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
LVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMTMPPFFDDPEAARPFFAGLRQ
EEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHCCHHHHHHHH
LAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGERR
HHHHHCCCCCCCCHHHHHHCCCCCCCHHHHCCCCEEEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]