| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is yrrC [H]
Identifier: 118578630
GI number: 118578630
Start: 186351
End: 188537
Strand: Direct
Name: yrrC [H]
Synonym: Ppro_0186
Alternate gene names: 118578630
Gene position: 186351-188537 (Clockwise)
Preceding gene: 118578629
Following gene: 118578631
Centisome position: 4.65
GC content: 59.03
Gene sequence:
>2187_bases ATGAACGGGAAGCCGAACACAACCGACATCCCGGTGGAGCGTCTCTCAGGTTCCGTCGAACGGGTAACCTTCCACAGCGA GGAGTCGGGTTTCTGTGTCCTTCGAGTCAAGGTCAAGGGGAAGCGCGACTTGGTCACAGTCATCGGCAGCGCCGCCGCCA TCACTGCCGGCGAATTCGTCGAGTGCGTGGGGAGCTGGCACAATGACAAAACCCACGGTCTACAGTTCAAGACCATCAAT CTGAAGACGGTTCCGCCGAGCACCCTGGAAGGGATTGAGAAGTACCTCGGCTCAGGAATGGTCAAGGGGATCGGCCCCCA TTTCGCCAAGATTCTGGTGAAGGCCTTCGGCATCGAAGTCTTTACCGTCATTGAGGAGACACCGGAGCGGCTGCTGGCAC TCCCCGGCATCGGCAGGAAGCGGACCGACAAAGTCACCGCCGCCTGGGCCGAGCAGAAGGCAATCCGGGAGATCATGGTA TTCCTCCAATCGCACGGCGTCGGCACCGGACGGGCAGTGAGGATCTACAAGACCTACGGTGACGAGGCGATCGTCAAGGT CTCCGAAAACCCCTACCGATTGGCACTCGACATCCACGGCATCGGCTTCAAGACCGCCGACGTCATTGCCGGCAAACTTG GCATCGCCCCCGACTCGCTGATCCGGGCCCAGGCCGGGGTGCGCCATGTGCTGCAGGAATTGTCCAGCGACGGTCACTGC GCCGCCCCCCACGACAAGCTCATCACGGAGTCGGTCAAGCTTCTGGAGATTAACGAAGCGATCCTGGAAGAAGCCGTCCG GGAGGAAATCACCCAGGAAAATCTGGTACCGGAAGAGATCGATGGTATCTCCTGTCTGTTCCTGACTCCACTCCACAGGG CCGAACTGGGAGTGGCGAACAGCATCAGACGGATTCTGGATGGTGCACCGCCGTGGGGTACAATCGATGCGGAGAAGGCG CTCCCTTGGGTGGAGGAAAAAACGGGCCTGACGCTTTCCCAGTCGCAGAAGGACGCTGTACGACTTGCTCTGGCCAGCAA GGCGCTCGTCATCACCGGCGGACCGGGCACCGGCAAGACGACCCTTGTCAACAGCATCCTCAAAATCCTCGCGGTCAAAC AGCTCCATATCCTGCTGGCCGCCCCGACCGGACGTGCAGCCAAGCGATTGACCGAGACCACCGGACAGGAGGCCAAGACC ATCCATCGCCTCCTGGAGTTCGATCCGCAGAGCTTCGGCTTCAAACGCGGGCGAGACAACCCTCTTGAAGCCGACCTCAT CGTCATCGACGAGTCATCCATGGTAGATGTGGTCCTGATGAACAAGCTGCTGGCGGCAATCCCCGACAATGCAGCTCTGA TGATCGTCGGCGACGTGGACCAGCTGCCATCGGTCGGCCCCGGTGCTGTGCTGTCTGACATCATTGAATCCAGAGCGGTT CCCACCGTCCGGTTGACCGAAATCTTCCGCCAGGCAGCCACCTCCCGGATCATCGTCAACGCTCACCGGATCAACAAAGG GGAGTTGCCGTTGAAAAATGAGAAGGACGAGCTTTCCGACTTCTACTTCGTCCCGGCGGATACCCCGGAGGAGATTCACG CCAAACTGATGCAGGTGGTTACCGAGCGAATCCCGAAACGCTTCGGCCTCCATCCGGTCAAGGACGTCCAAGTGCTCACC CCCATGAACCGGGGAGGACTGGGCACCCATTCCCTGAACGCCGAACTGCAGAAGATGTTGAACGCCAACAGCGAACCACG GGTGACCCGTTTCGGCACTACCTTCTCGCCGGGCGACAAGATCATCCAGACGGTGAACAACTACGACAAGGAAGTCTTCA ATGGGGATATCGGGCAGATTCTTGAAATCGACACCGAAGAGAGCTCCCTCAAAGCCGATTATGACGGCAGGATTGTGGAG TACGAATTTGGGGAACTTGACGAGGTGTCGCTTGCCTACGCCACCAGCATCCACAAGAGCCAGGGTTCGGAGTACCCGGC AGTGGTAATCCCGTTGGCGATGCAGCACTATATGCTGCTGGAGCGGAATCTGGTCTACACCGCTGTCACCCGGGGGAAGA AACTGGTGACGATCATCGGCCAGCCGAAGGCTTTAGGCATGGCGGTGAGAAATACCAACTCCAACCGGAGACTGACCAAC TTGACGGCGAGGCTTCAACACACATGA
Upstream 100 bases:
>100_bases CGATCAAGACAGCACAGAGCCTGGCGGATGAAATGGTAGCCGTTGACGGCAATGAAGAGCTCACCATCTTTATTGCCCCG GTAGGCAAGGTCGTGAAAAA
Downstream 100 bases:
>100_bases AAGACCCGATTCTCGACCATCCGGCTCTGTCGGCCCGATACTTCTATCCCTGGCCGAACCATTTTGACGAGCCTTTTTTC ATCCAAGGGGACGGCTTCCG
Product: RecD/TraA family helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 728; Mature: 728
Protein sequence:
>728_residues MNGKPNTTDIPVERLSGSVERVTFHSEESGFCVLRVKVKGKRDLVTVIGSAAAITAGEFVECVGSWHNDKTHGLQFKTIN LKTVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFGIEVFTVIEETPERLLALPGIGRKRTDKVTAAWAEQKAIREIMV FLQSHGVGTGRAVRIYKTYGDEAIVKVSENPYRLALDIHGIGFKTADVIAGKLGIAPDSLIRAQAGVRHVLQELSSDGHC AAPHDKLITESVKLLEINEAILEEAVREEITQENLVPEEIDGISCLFLTPLHRAELGVANSIRRILDGAPPWGTIDAEKA LPWVEEKTGLTLSQSQKDAVRLALASKALVITGGPGTGKTTLVNSILKILAVKQLHILLAAPTGRAAKRLTETTGQEAKT IHRLLEFDPQSFGFKRGRDNPLEADLIVIDESSMVDVVLMNKLLAAIPDNAALMIVGDVDQLPSVGPGAVLSDIIESRAV PTVRLTEIFRQAATSRIIVNAHRINKGELPLKNEKDELSDFYFVPADTPEEIHAKLMQVVTERIPKRFGLHPVKDVQVLT PMNRGGLGTHSLNAELQKMLNANSEPRVTRFGTTFSPGDKIIQTVNNYDKEVFNGDIGQILEIDTEESSLKADYDGRIVE YEFGELDEVSLAYATSIHKSQGSEYPAVVIPLAMQHYMLLERNLVYTAVTRGKKLVTIIGQPKALGMAVRNTNSNRRLTN LTARLQHT
Sequences:
>Translated_728_residues MNGKPNTTDIPVERLSGSVERVTFHSEESGFCVLRVKVKGKRDLVTVIGSAAAITAGEFVECVGSWHNDKTHGLQFKTIN LKTVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFGIEVFTVIEETPERLLALPGIGRKRTDKVTAAWAEQKAIREIMV FLQSHGVGTGRAVRIYKTYGDEAIVKVSENPYRLALDIHGIGFKTADVIAGKLGIAPDSLIRAQAGVRHVLQELSSDGHC AAPHDKLITESVKLLEINEAILEEAVREEITQENLVPEEIDGISCLFLTPLHRAELGVANSIRRILDGAPPWGTIDAEKA LPWVEEKTGLTLSQSQKDAVRLALASKALVITGGPGTGKTTLVNSILKILAVKQLHILLAAPTGRAAKRLTETTGQEAKT IHRLLEFDPQSFGFKRGRDNPLEADLIVIDESSMVDVVLMNKLLAAIPDNAALMIVGDVDQLPSVGPGAVLSDIIESRAV PTVRLTEIFRQAATSRIIVNAHRINKGELPLKNEKDELSDFYFVPADTPEEIHAKLMQVVTERIPKRFGLHPVKDVQVLT PMNRGGLGTHSLNAELQKMLNANSEPRVTRFGTTFSPGDKIIQTVNNYDKEVFNGDIGQILEIDTEESSLKADYDGRIVE YEFGELDEVSLAYATSIHKSQGSEYPAVVIPLAMQHYMLLERNLVYTAVTRGKKLVTIIGQPKALGMAVRNTNSNRRLTN LTARLQHT >Mature_728_residues MNGKPNTTDIPVERLSGSVERVTFHSEESGFCVLRVKVKGKRDLVTVIGSAAAITAGEFVECVGSWHNDKTHGLQFKTIN LKTVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFGIEVFTVIEETPERLLALPGIGRKRTDKVTAAWAEQKAIREIMV FLQSHGVGTGRAVRIYKTYGDEAIVKVSENPYRLALDIHGIGFKTADVIAGKLGIAPDSLIRAQAGVRHVLQELSSDGHC AAPHDKLITESVKLLEINEAILEEAVREEITQENLVPEEIDGISCLFLTPLHRAELGVANSIRRILDGAPPWGTIDAEKA LPWVEEKTGLTLSQSQKDAVRLALASKALVITGGPGTGKTTLVNSILKILAVKQLHILLAAPTGRAAKRLTETTGQEAKT IHRLLEFDPQSFGFKRGRDNPLEADLIVIDESSMVDVVLMNKLLAAIPDNAALMIVGDVDQLPSVGPGAVLSDIIESRAV PTVRLTEIFRQAATSRIIVNAHRINKGELPLKNEKDELSDFYFVPADTPEEIHAKLMQVVTERIPKRFGLHPVKDVQVLT PMNRGGLGTHSLNAELQKMLNANSEPRVTRFGTTFSPGDKIIQTVNNYDKEVFNGDIGQILEIDTEESSLKADYDGRIVE YEFGELDEVSLAYATSIHKSQGSEYPAVVIPLAMQHYMLLERNLVYTAVTRGKKLVTIIGQPKALGMAVRNTNSNRRLTN LTARLQHT
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=417, Percent_Identity=27.0983213429257, Blast_Score=137, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 79577; Mature: 79577
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGKPNTTDIPVERLSGSVERVTFHSEESGFCVLRVKVKGKRDLVTVIGSAAAITAGEFV CCCCCCCCCCCHHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHCCHHHHHHHHHH ECVGSWHNDKTHGLQFKTINLKTVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFGIEV HHHHCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCCE FTVIEETPERLLALPGIGRKRTDKVTAAWAEQKAIREIMVFLQSHGVGTGRAVRIYKTYG EEHHHHCCHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC DEAIVKVSENPYRLALDIHGIGFKTADVIAGKLGIAPDSLIRAQAGVRHVLQELSSDGHC CCEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC AAPHDKLITESVKLLEINEAILEEAVREEITQENLVPEEIDGISCLFLTPLHRAELGVAN CCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCHHHHHHHHHH SIRRILDGAPPWGTIDAEKALPWVEEKTGLTLSQSQKDAVRLALASKALVITGGPGTGKT HHHHHHCCCCCCCCCCHHHCCCCCHHCCCCEECCCHHHHHHHEEECCEEEEECCCCCCHH TLVNSILKILAVKQLHILLAAPTGRAAKRLTETTGQEAKTIHRLLEFDPQSFGFKRGRDN HHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHCCCCCCCCC PLEADLIVIDESSMVDVVLMNKLLAAIPDNAALMIVGDVDQLPSVGPGAVLSDIIESRAV CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHCC PTVRLTEIFRQAATSRIIVNAHRINKGELPLKNEKDELSDFYFVPADTPEEIHAKLMQVV CCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH TERIPKRFGLHPVKDVQVLTPMNRGGLGTHSLNAELQKMLNANSEPRVTRFGTTFSPGDK HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHH IIQTVNNYDKEVFNGDIGQILEIDTEESSLKADYDGRIVEYEFGELDEVSLAYATSIHKS HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC QGSEYPAVVIPLAMQHYMLLERNLVYTAVTRGKKLVTIIGQPKALGMAVRNTNSNRRLTN CCCCCCEEEEHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCHHHEEEEECCCCCCEEEE LTARLQHT EHEEECCC >Mature Secondary Structure MNGKPNTTDIPVERLSGSVERVTFHSEESGFCVLRVKVKGKRDLVTVIGSAAAITAGEFV CCCCCCCCCCCHHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHCCHHHHHHHHHH ECVGSWHNDKTHGLQFKTINLKTVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFGIEV HHHHCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCCE FTVIEETPERLLALPGIGRKRTDKVTAAWAEQKAIREIMVFLQSHGVGTGRAVRIYKTYG EEHHHHCCHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC DEAIVKVSENPYRLALDIHGIGFKTADVIAGKLGIAPDSLIRAQAGVRHVLQELSSDGHC CCEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC AAPHDKLITESVKLLEINEAILEEAVREEITQENLVPEEIDGISCLFLTPLHRAELGVAN CCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCHHHHHHHHHH SIRRILDGAPPWGTIDAEKALPWVEEKTGLTLSQSQKDAVRLALASKALVITGGPGTGKT HHHHHHCCCCCCCCCCHHHCCCCCHHCCCCEECCCHHHHHHHEEECCEEEEECCCCCCHH TLVNSILKILAVKQLHILLAAPTGRAAKRLTETTGQEAKTIHRLLEFDPQSFGFKRGRDN HHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHCCCCCCCCC PLEADLIVIDESSMVDVVLMNKLLAAIPDNAALMIVGDVDQLPSVGPGAVLSDIIESRAV CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHCC PTVRLTEIFRQAATSRIIVNAHRINKGELPLKNEKDELSDFYFVPADTPEEIHAKLMQVV CCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH TERIPKRFGLHPVKDVQVLTPMNRGGLGTHSLNAELQKMLNANSEPRVTRFGTTFSPGDK HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHH IIQTVNNYDKEVFNGDIGQILEIDTEESSLKADYDGRIVEYEFGELDEVSLAYATSIHKS HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC QGSEYPAVVIPLAMQHYMLLERNLVYTAVTRGKKLVTIIGQPKALGMAVRNTNSNRRLTN CCCCCCEEEEHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCHHHEEEEECCCCCCEEEE LTARLQHT EHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]