| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
Click here to switch to the map view.
The map label for this gene is lytF [H]
Identifier: 118480273
GI number: 118480273
Start: 4984568
End: 4986310
Strand: Direct
Name: lytF [H]
Synonym: BALH_4732
Alternate gene names: 118480273
Gene position: 4984568-4986310 (Clockwise)
Preceding gene: 118480272
Following gene: 118480274
Centisome position: 94.82
GC content: 39.93
Gene sequence:
>1743_bases ATGAAAAAATACCTTGCCGGTCTTGCGGCAGTGTCTGTAGCAGGAGGAGCAGCACCTACACTTGATAGTGTTCAAGCTGC CCCTGAACAAACTACACAAAAAGCTGCTACAACTGTCCAAGCTTCTGCATCAAACAGCTCATCTTATACGGTAAACGCTA GCGTATTACATGTTCGTGCAGGATCAAGTACTTCTCACGACATCATCTCTCGCGTTTATAACGGTCAATCACTAAACGTG ATTGGCGAAGAAAATGGTTGGTACAAAATTAACATTAATGGAAAAACAGGCTTTGTTAGTGGTGAATTTGTATCAAAAAA TGGTACAAGCAATTCAAATGTAAGTACAACAGGTGGAAAAAATAAAGTTACTGCTGATGTATTACGTGTACGTACCGCTC CTAACACTTCTAGTTCTGTTTCAGGACGTGTATATGAAGGACAAACATTAAACGTAATTGGTCAAGAAAATGGTTGGGTA AAAATCAATCATAATGGACAAGTTGGCTATGTAAGTGGCGAATTCGTATCTGGTGTTTCTTCTAATGCAGGTTCTTCAAA CAACAATACGAATAGTAACAACAAAGAATCTGTAAAACCAGCAAGCGGAAACTATACAGTAAATGTATCTTCCCTTCGTG TTCGTACAGGCCCTAGCACTTCTCACACAACTGTAGGTTCTGTTACAAAAGGACAAGTAGTACAAGTTGTTGGCGAAGTG CAAGATTGGTTCAAAATCAATTATGCAGGTCAAACGGCTTACGTAAGTAAAGACTACGTAACAAAAGGCGGTTCTAGCGA TAACGTTACACAAGGAAACAACCAAAATAATAATCAAAACAATAATGTAACTGTTCAAACTGGTGGTACTTACGTTGTTA ACGCAACATCTCTACGCGTTCGTACAGGTCCTGCTACTTACCATAGCGTAATTGGTGGCGTATTAAATGGTACGACATTA AACGTAATTGGCTCTGAAGGTAGCTGGTTTAAAGTTAACTATCAAGGAAAAACAGGCTACGTTAGTAGCGAATTCATGAA ATTCGTTAAAGGTGGCACTACTACTCCTGAGCAACCAAAACAACCTGAACAACCTAATCAAGGTGCAATTGGTGACTACT ACATTAATGCTTCTGCCTTAAATGTACGTAGTGGTGAAGGTACAAATTATAGAATCATAGGCGCACTTCCACAAGGACAG AAGGTTCAAGTAATCTCTGAAAACTCTGGATGGAGCAAAATTAACTACAACGGTCAAACTGGTTATATCGGAACACGTTA CCTCTCTAAAACACCAGTTGGCGGCGCAGTAGATAATAATAAGCCTAACAACAACCAAAATAACAATCAAAACAATAACA ACAATACAGGTAATAATAGCGGCAACAGTTCTTCCATACTTGCATATGCAAAAGGAATGCAAGGCGTACCATACGTTTGG GGCGGAACTTCTGCTAACGGTGTGGACTGCAGTGGCTACATCTACCACGTATTTAAGAAATTTGGTCATAACATTAGCCG TCAAAGTGTTGCGGGATATTGGGGTAGCCTACCACAAACTTCAAATCCACAACCAGGCGACTTAATTTATTTCCAAAACA CTTATAAATCGGGTCCTTCTCACATGGGTATTTACCTTGGGGGCGGATCATTCATCCAAGCTGGAGATAAAGGTGTCGCA ATCGCTTCATTAAGCAATTCTTATTGGAGTAAGCACTTCTTAGGTTATACGAAAGCACCTTAA
Upstream 100 bases:
>100_bases CCCGCATAAGTCTTGACAGTAATCGACATGCTCTTTAGAATTTTTAACAGTTGGTAAATATTTCTTCACTACATTACAGA CAGAAAGGAATCGACAAATT
Downstream 100 bases:
>100_bases GTTATATTTTTAGAGCCTTCTAGATTACTAGATGGCTCTTTTTATTATGTTTCACCTATATCCCCCAAAAATAATGTATC TATTTTCCTATTTCATACAC
Product: cell wall hydrolase, N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: Cell wall-associated polypeptide CWBP49; Gamma-D-glutamate-meso-diaminopimelate muropeptidase lytF [H]
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQTTQKAATTVQASASNSSSYTVNASVLHVRAGSSTSHDIISRVYNGQSLNV IGEENGWYKININGKTGFVSGEFVSKNGTSNSNVSTTGGKNKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWV KINHNGQVGYVSGEFVSGVSSNAGSSNNNTNSNNKESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRVRTGPATYHSVIGGVLNGTTL NVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPKQPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQ KVQVISENSGWSKINYNGQTGYIGTRYLSKTPVGGAVDNNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVW GGTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSHMGIYLGGGSFIQAGDKGVA IASLSNSYWSKHFLGYTKAP
Sequences:
>Translated_580_residues MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQTTQKAATTVQASASNSSSYTVNASVLHVRAGSSTSHDIISRVYNGQSLNV IGEENGWYKININGKTGFVSGEFVSKNGTSNSNVSTTGGKNKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWV KINHNGQVGYVSGEFVSGVSSNAGSSNNNTNSNNKESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRVRTGPATYHSVIGGVLNGTTL NVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPKQPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQ KVQVISENSGWSKINYNGQTGYIGTRYLSKTPVGGAVDNNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVW GGTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSHMGIYLGGGSFIQAGDKGVA IASLSNSYWSKHFLGYTKAP >Mature_580_residues MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQTTQKAATTVQASASNSSSYTVNASVLHVRAGSSTSHDIISRVYNGQSLNV IGEENGWYKININGKTGFVSGEFVSKNGTSNSNVSTTGGKNKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWV KINHNGQVGYVSGEFVSGVSSNAGSSNNNTNSNNKESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRVRTGPATYHSVIGGVLNGTTL NVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPKQPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQ KVQVISENSGWSKINYNGQTGYIGTRYLSKTPVGGAVDNNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVW GGTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSHMGIYLGGGSFIQAGDKGVA IASLSNSYWSKHFLGYTKAP
Specific function: Cleaves gamma-D-glutamate-meso-diaminopimelate bonds. Cell wall hydrolase involved in cell autolysis [H]
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Secreted, cell wall. Note=LysM repeats are thought to be involved in peptidoglycan binding [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 LysM repeats [H]
Homologues:
Organism=Escherichia coli, GI1787944, Length=118, Percent_Identity=37.2881355932203, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1786421, Length=145, Percent_Identity=29.6551724137931, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788501, Length=128, Percent_Identity=32.03125, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000064 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01476 LysM; PF00877 NLPC_P60 [H]
EC number: 3.5.1.28
Molecular weight: Translated: 61123; Mature: 61123
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQTTQKAATTVQASASNSSSYTVNASVLHVRA CHHHHHHHHHEEECCCCCCCHHHHHCCCHHHHHHHHHEEEECCCCCCCEEEEEEEEEEEC GSSTSHDIISRVYNGQSLNVIGEENGWYKININGKTGFVSGEFVSKNGTSNSNVSTTGGK CCCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCEEEEECEEEECCCCCCCCEECCCCC NKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWVKINHNGQVGYVSGEFVSGVS CCEEEEEEEEECCCCCCCCCCCEEECCCEEEEEECCCCEEEEECCCCEEEECCHHHCCCC SNAGSSNNNTNSNNKESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHH QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRV CCEEEEEECCCEEEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEE RTGPATYHSVIGGVLNGTTLNVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPK EECCCHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCC QPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQT CCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCC GYIGTRYLSKTPVGGAVDNNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVW CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE GGTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPS CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC HMGIYLGGGSFIQAGDKGVAIASLSNSYWSKHFLGYTKAP EEEEEECCCCEEECCCCCEEEEEECCCHHHHHHCCCCCCC >Mature Secondary Structure MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQTTQKAATTVQASASNSSSYTVNASVLHVRA CHHHHHHHHHEEECCCCCCCHHHHHCCCHHHHHHHHHEEEECCCCCCCEEEEEEEEEEEC GSSTSHDIISRVYNGQSLNVIGEENGWYKININGKTGFVSGEFVSKNGTSNSNVSTTGGK CCCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCEEEEECEEEECCCCCCCCEECCCCC NKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWVKINHNGQVGYVSGEFVSGVS CCEEEEEEEEECCCCCCCCCCCEEECCCEEEEEECCCCEEEEECCCCEEEECCHHHCCCC SNAGSSNNNTNSNNKESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHH QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRV CCEEEEEECCCEEEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEE RTGPATYHSVIGGVLNGTTLNVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPK EECCCHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCC QPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQT CCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCC GYIGTRYLSKTPVGGAVDNNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVW CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE GGTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPS CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC HMGIYLGGGSFIQAGDKGVAIASLSNSYWSKHFLGYTKAP EEEEEECCCCEEECCCCCEEEEEECCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 10206711 [H]