Click here to switch to the map view.

The map label for this gene is ysdC [H]

Identifier: 118479719

GI number: 118479719

Start: 4375330

End: 4376424

Strand: Reverse

Name: ysdC [H]

Synonym: BALH_4155

Alternate gene names: 118479719

Gene position: 4376424-4375330 (Counterclockwise)

Preceding gene: 118479720

Following gene: 118479717

Centisome position: 83.25

GC content: 40.82

Gene sequence:

>1095_bases
GTGTTGGCAATGACAAAATTAGACGAGACATTGACAATGCTAAAAGAATTAACAGATGCACGCGGTATTGCGGGTAACGA
GCGTGAACCACGTGAAGTAATGAAGAAATATATTGAGCCGTTTGCGGACGAACTTTCTACTGATAATTTAGGAAGTTTAG
TTGCGAAAAAAGTAGGGGAAGAAAACGGCCCGAAAATTATGGTTGCAGGTCATTTAGATGAAGTTGGCTTTATGATTACG
CAAATTGATGACAAAGGTTTCCTTCGTTTCCAAACAGTTGGTGGCTGGTGGTCACAAGTTATGCTTGCGCAGCGCGTGAC
AATTGTAACGCGTAAAGGAGATGTAACAGGTGTAATCGGTTCAAAACCACCGCATATCTTACCTCCAGAAGCGCGTAAAA
AGCCAGTTGAAATTAAAGACATGTTCATCGATATTGGTGCTTCTAGCCAAGAAGAAGCAATGGAGTGGGGCGTACGACCA
GGAGATCAAGTTGTACCTTACTTTGAATTCCAAGTGATGAAGAATGAAAAAATGTTACTTGCAAAAGCATGGGATAACCG
AATTGGTTGTGCAATTGCAATTGACGTATTAAAACAATTAAAAGATGAAAAGCATCCAAACGTTGTATACGGCGTAGGGA
CTGTACAAGAAGAAGTCGGTCTTCGTGGTGCGAAAACATCTGCAAACTATATTAAACCAGATATCGCATTCGCAGTAGAT
GTTGGTATCGCTGGTGACACACCGGGGGTAACGTCAAAAGAAGCGCAAAGTAAAATGGGTGATGGCCCACAGATCATTTT
ATATGATGCTTCTGTTATCGGTCATACCGGTTTACGTGACTTTGTAGTTGATGTTGCTGATGAATTACAAATCCCGTATC
AATATGATTCAGTAGCGGGCGGCGGAACGGATGCAGGTGCAATTCATATTGCTGTAAATGGTATTCCGTCTATGGCAATT
ACGATTGCAACGCGTTACATTCATTCTCATGCGGCAATGTTACACCGTGATGACTATGAAAATGCAGTGAAGTTAATTGT
AGAAGTTATTAAACGTCTTGATAAAGAGGCTGTACATAACATTACATTTAATTAA

Upstream 100 bases:

>100_bases
AAACGAAGTAAATCATCAGCGTCAAACACAAGGATACTAATTTAATTTTTGAATATTTCAATTTCCTTTTGTATAATGAA
GTGACTGAAGAAAAAGGAGG

Downstream 100 bases:

>100_bases
TAGAAAAAGCGAAGGAGCCTTTCCTTCGCTTTTTTATGTTTTAAAAAGGTCGTTCTAATCCCGCTGCAGTATGAGCCCCT
AAAATGATTAAACGAGTTAA

Product: M42 family deblocking aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MLAMTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMIT
QIDDKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRP
GDQVVPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVD
VGIAGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAI
TIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN

Sequences:

>Translated_364_residues
MLAMTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMIT
QIDDKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRP
GDQVVPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVD
VGIAGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAI
TIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN
>Mature_364_residues
MLAMTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMIT
QIDDKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRP
GDQVVPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVD
VGIAGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAI
TIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=355, Percent_Identity=40.5633802816901, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=33.2386363636364, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI87082417, Length=340, Percent_Identity=31.1764705882353, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39884; Mature: 39884

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAMTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
ENGPKIMVAGHLDEVGFMITQIDDKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIG
CCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHEEEEEECCCEEEECC
SKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRPGDQVVPYFEFQVMKNEKMLL
CCCCCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCEEE
AKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVD
EECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEE
VGIAGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAG
ECCCCCCCCCCCHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEECCCCC
GGTDAGAIHIAVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHN
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
ITFN
CCCC
>Mature Secondary Structure
MLAMTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
ENGPKIMVAGHLDEVGFMITQIDDKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIG
CCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHEEEEEECCCEEEECC
SKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGVRPGDQVVPYFEFQVMKNEKMLL
CCCCCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCEEE
AKAWDNRIGCAIAIDVLKQLKDEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVD
EECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEE
VGIAGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAG
ECCCCCCCCCCCHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEECCCCC
GGTDAGAIHIAVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHN
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
ITFN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]