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The map label for this gene is rnhC [H]

Identifier: 118479705

GI number: 118479705

Start: 4358183

End: 4359196

Strand: Direct

Name: rnhC [H]

Synonym: BALH_4139

Alternate gene names: 118479705

Gene position: 4358183-4359196 (Clockwise)

Preceding gene: 118479692

Following gene: 118479710

Centisome position: 82.9

GC content: 38.56

Gene sequence:

>1014_bases
ATGAACCTTCATAATATGGAAACAGAAAGAACAATCCGATATGATAAAAATAACAATATAAAAAAAGGGGCGACCATTAT
GTCAAATTCTATCGTAATTCAAACAAATTCTACAGTAATTGAAGACATGAAACAACAATATAAACATTCGCTTAGCCCGA
AAACTCCGCAAGGCGGGATCTTCATGGCAAAGGTGCCATCTTGCACAATTACAGCATATAAATCTGGAAAAGTAATGTTC
CAAGGTGGACGTGCTGAAGCAGAAGCTGCCCGTTGGCAAACTGTCTCCCAAACTCCAAAAACAGCTGTAAAAAAATCTGT
CGATTCACACCGTTTTGCACCGCCTGCTTCCATCGGTACAATGTCGATCGTAGGGTCAGATGAAGTGGGTACTGGTGATT
TCTTCGGACCGATGACAGTCGTTGCTGTATATGTAGATGCGAAGCAAATTCCACTACTAAAAGAGCTTGGTGTAAAAGAC
TCTAAAAACTTAAATGACGAACAAATTACTGCCATTGCAAAACAACTTCTACACGTTGTTCCTTACAGCTCTCTCGTTCT
TCATAACGAAAAATATAACGAGCTATTTGATAAAGGAAACAACCAAGGTAAGTTAAAAGCTTTACTACACAATAAAGCTA
TTACAAACTTATTAGCTAAAATGGCGCCTACAAAACCTGAAGGCGTCTTAATCGACCAATTCACACAACCTGATACATAC
TACAAATATTTAGCAAAACAAAAACAGGTACAGCGTGAAAATGTTTATTTCGCGACAAAAGGAGAAAGCGTCCATTTAGC
TGTTGCCGCTGCCTCCATTTTAGCTCGTTACTCATTCGTAAAACAATTTAACGAACTAAGCAAAAAAGCTGGTATGCCGC
TTCCAAAAGGTGCAGGTAAACAAGTTGATATCGCCGCCGCTAAATTAATTCAAAAGCTTGGTAAAGAACGATTACCTGAG
TTTGTGAAACTGCATTTTGCTAATACGGAAAAGGCGTTTCGCTTACTAAAATAG

Upstream 100 bases:

>100_bases
CTGACCATAGATTTCTACATTAATTCGACTTTTCTTTCCCTTTTGTTGTGACAACTCACCGGCCTCCAATCACGTACAGA
ATCCTAAAGTTTATCATACC

Downstream 100 bases:

>100_bases
TATCGACAAAAACAGGAGCCTACAAACTCCTGTTTTTTGTTTTATCCTACTATTGTCCTTATAGTTTTGTTATAATTATA
ATATACAGATTATTCTAACA

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MNLHNMETERTIRYDKNNNIKKGATIMSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMF
QGGRAEAEAARWQTVSQTPKTAVKKSVDSHRFAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKD
SKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY
YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPE
FVKLHFANTEKAFRLLK

Sequences:

>Translated_337_residues
MNLHNMETERTIRYDKNNNIKKGATIMSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMF
QGGRAEAEAARWQTVSQTPKTAVKKSVDSHRFAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKD
SKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY
YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPE
FVKLHFANTEKAFRLLK
>Mature_337_residues
MNLHNMETERTIRYDKNNNIKKGATIMSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMF
QGGRAEAEAARWQTVSQTPKTAVKKSVDSHRFAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKD
SKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY
YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPE
FVKLHFANTEKAFRLLK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 37315; Mature: 37315

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLHNMETERTIRYDKNNNIKKGATIMSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGI
CCCCCCCCCCEEEECCCCCCCCCCEEEECEEEEEECCHHHHHHHHHHHHCCCCCCCCCCE
FMAKVPSCTITAYKSGKVMFQGGRAEAEAARWQTVSQTPKTAVKKSVDSHRFAPPASIGT
EEEECCCEEEEEEECCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCE
MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVV
EEEECCCCCCCCCCCHHHHHEEEEECCHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY
CCHHEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH
YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKKAGMPLPKGAGK
HHHHHHHHHHHHHCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLK
CCHHHHHHHHHHHHHHHCHHHHEECCCCHHHHHHHCC
>Mature Secondary Structure
MNLHNMETERTIRYDKNNNIKKGATIMSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGI
CCCCCCCCCCEEEECCCCCCCCCCEEEECEEEEEECCHHHHHHHHHHHHCCCCCCCCCCE
FMAKVPSCTITAYKSGKVMFQGGRAEAEAARWQTVSQTPKTAVKKSVDSHRFAPPASIGT
EEEECCCEEEEEEECCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCE
MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVV
EEEECCCCCCCCCCCHHHHHEEEEECCHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY
CCHHEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH
YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKKAGMPLPKGAGK
HHHHHHHHHHHHHCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLK
CCHHHHHHHHHHHHHHHCHHHHEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA