| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is polX [H]
Identifier: 118479702
GI number: 118479702
Start: 4355552
End: 4357273
Strand: Reverse
Name: polX [H]
Synonym: BALH_4136
Alternate gene names: 118479702
Gene position: 4357273-4355552 (Counterclockwise)
Preceding gene: 118479703
Following gene: 118479701
Centisome position: 82.88
GC content: 37.86
Gene sequence:
>1722_bases ATGATGAAAGTAAATAAAAAACAAGTAATTAAATTATTAGAGACAATCGGGCTTTTCATGGAACTAAAGGGCGCGAATCC ATTTAAAATATCTGCATTTCGTAAAGCGGCAGCAGCGCTAGAAAGTGATGATCGTAGTCTTTCTGAGATTGAAGATTTCA CGAAGATTCCGGGAATCGGAAAAGGAACAGCAGCAGTTATTCAAGAATATATAGAATCGGGAACATCTGAAGTGTTACAA GAGCTTGAAAAAGAGGTTCCAAGTAGCTTATTACCGTTATTAAAATTGCCAGGCCTAGGTGGTAAAAAGGTAGCTAAGTT ATATAAAGAACTTGGTGTTGTTGATATGGAGTCGCTAAAAGCGGTTTGTGAGGAAAATAAAGTACAAGCTTTAGCTGGTT TCGGCAAAAAAACAGAAGAGAAAATATTAGAAGCAATCGATCAAGTAGGATCTCGTCCGGAGCGTTTACCAATCGCAATG GTATTGCCTATTGCCGGGGAAATAGAGGAGAAATTGTCGAATATTGCTGAGGTAATTCGTTTCTCTCGCGCTGGTAGTTT GCGCCGTGTTCGTGAAACAGTGAAAGATTTAGATTTTATTATTGCAACGACAGAACCAGCTGCAGTACGTGAGCATTTAC TACAATTTGATAATATGATTGAAGTAATCGCGAGTGGGGATACGAAAGTTTCTGTTCGTCTTCAATATGAATATGATATT TCGATTGATTTCCGCTTAGTAAAACCAGAAGAGTTTATTACAACTCTTCACCATTTCACAGGATCAAAAGACCATAACGT AAAAATGCGTCAAATCGCAAAAGATAAAGGCGAGAAAATTAGTGAGTACGGTGTAGAGAACTTGGAAACAGGGGAAGTGA AAACATTTGAGACGGAAGAAGAATTCTTTGCTCATTTCGGTCTTCCATTTATCCCGCCAGAAGTTCGTGAAGATGGAAAA GAAATTGAATTAATTAAAGAGTATCCAAACTTAATTCAGTTCTCTGATATACAAGGTGATTTACATATGCATACAACATG GAGTGATGGTGCTTTTTCTATTGAAGAGATGGTACAAGCGTGCCGTACTCGTGGATATAAGTTTATGGCAATTACTGATC ACTCACAATACTTGAAAGTAGCGAACGGTTTAACGAAAGAGCGCCTTCGTGAACAAGCGAAAGAAATTGAACGTATGAAC GAAAAGTATCCAGACATTACAATTTTACGCGGAATTGAAATGGACATTTTACCGGATGCCTCGCTTGATTTTGATGATGA AGTATTAGCAGAACTAGATTATGTCATTGGAGCAATTCACTCTAGCTTCTCACAAGACCGTGAAACGATTATGAAACGTC TTCGTGCTGCACTTGAGAATAAACATGTCACAATGATTGCTCATCCGACAGGACGTCTTCTTGGACGCCGTGAGGGGTAT GATGTAGATACAGATTTATTAATCGAACTCGCAAAAGAAACAAATACAGTTTTAGAATTAAATGCGAATCCAAACCGTCT AGATTTAAGCGCGAAATTATTAAAACAAGCACAAGATGCCGGTGTAAAAGTAGCGATTAACACGGATGCTCATACACTTG AAATGTTAGAAGATATGGAAACAGGTGTAGCGGCAGCACGTAAAGGTTGGATTCAAAAAGATAACGTAATTAACACGTGG GATATTGAACGTTTATTAGACTATATTAAACGTAATAAGTAA
Upstream 100 bases:
>100_bases CTCTCTGAAAAGGTGAAGGAACTATGGCAGACAGGTAGCAGAGTATAACTTCTCTTTTTTCGGAAAGAGAAGTTTTTTTC TATGAAAGAAAGGCGGGACA
Downstream 100 bases:
>100_bases CACAAGGGGGACCTGCAACATGTTAGAAAGAACGTTGCGTGTATTAGAATATAATAAAGTAAAAGAACAATTACTTGAAC ATACAGCATCTTCACTTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MMKVNKKQVIKLLETIGLFMELKGANPFKISAFRKAAAALESDDRSLSEIEDFTKIPGIGKGTAAVIQEYIESGTSEVLQ ELEKEVPSSLLPLLKLPGLGGKKVAKLYKELGVVDMESLKAVCEENKVQALAGFGKKTEEKILEAIDQVGSRPERLPIAM VLPIAGEIEEKLSNIAEVIRFSRAGSLRRVRETVKDLDFIIATTEPAAVREHLLQFDNMIEVIASGDTKVSVRLQYEYDI SIDFRLVKPEEFITTLHHFTGSKDHNVKMRQIAKDKGEKISEYGVENLETGEVKTFETEEEFFAHFGLPFIPPEVREDGK EIELIKEYPNLIQFSDIQGDLHMHTTWSDGAFSIEEMVQACRTRGYKFMAITDHSQYLKVANGLTKERLREQAKEIERMN EKYPDITILRGIEMDILPDASLDFDDEVLAELDYVIGAIHSSFSQDRETIMKRLRAALENKHVTMIAHPTGRLLGRREGY DVDTDLLIELAKETNTVLELNANPNRLDLSAKLLKQAQDAGVKVAINTDAHTLEMLEDMETGVAAARKGWIQKDNVINTW DIERLLDYIKRNK
Sequences:
>Translated_573_residues MMKVNKKQVIKLLETIGLFMELKGANPFKISAFRKAAAALESDDRSLSEIEDFTKIPGIGKGTAAVIQEYIESGTSEVLQ ELEKEVPSSLLPLLKLPGLGGKKVAKLYKELGVVDMESLKAVCEENKVQALAGFGKKTEEKILEAIDQVGSRPERLPIAM VLPIAGEIEEKLSNIAEVIRFSRAGSLRRVRETVKDLDFIIATTEPAAVREHLLQFDNMIEVIASGDTKVSVRLQYEYDI SIDFRLVKPEEFITTLHHFTGSKDHNVKMRQIAKDKGEKISEYGVENLETGEVKTFETEEEFFAHFGLPFIPPEVREDGK EIELIKEYPNLIQFSDIQGDLHMHTTWSDGAFSIEEMVQACRTRGYKFMAITDHSQYLKVANGLTKERLREQAKEIERMN EKYPDITILRGIEMDILPDASLDFDDEVLAELDYVIGAIHSSFSQDRETIMKRLRAALENKHVTMIAHPTGRLLGRREGY DVDTDLLIELAKETNTVLELNANPNRLDLSAKLLKQAQDAGVKVAINTDAHTLEMLEDMETGVAAARKGWIQKDNVINTW DIERLLDYIKRNK >Mature_573_residues MMKVNKKQVIKLLETIGLFMELKGANPFKISAFRKAAAALESDDRSLSEIEDFTKIPGIGKGTAAVIQEYIESGTSEVLQ ELEKEVPSSLLPLLKLPGLGGKKVAKLYKELGVVDMESLKAVCEENKVQALAGFGKKTEEKILEAIDQVGSRPERLPIAM VLPIAGEIEEKLSNIAEVIRFSRAGSLRRVRETVKDLDFIIATTEPAAVREHLLQFDNMIEVIASGDTKVSVRLQYEYDI SIDFRLVKPEEFITTLHHFTGSKDHNVKMRQIAKDKGEKISEYGVENLETGEVKTFETEEEFFAHFGLPFIPPEVREDGK EIELIKEYPNLIQFSDIQGDLHMHTTWSDGAFSIEEMVQACRTRGYKFMAITDHSQYLKVANGLTKERLREQAKEIERMN EKYPDITILRGIEMDILPDASLDFDDEVLAELDYVIGAIHSSFSQDRETIMKRLRAALENKHVTMIAHPTGRLLGRREGY DVDTDLLIELAKETNTVLELNANPNRLDLSAKLLKQAQDAGVKVAINTDAHTLEMLEDMETGVAAARKGWIQKDNVINTW DIERLLDYIKRNK
Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing
COG id: COG1796
COG function: function code L; DNA polymerase IV (family X)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PHP family [H]
Homologues:
Organism=Homo sapiens, GI4505931, Length=314, Percent_Identity=23.8853503184713, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002054 - InterPro: IPR010996 - InterPro: IPR003583 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 - InterPro: IPR022311 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 64692; Mature: 64692
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKVNKKQVIKLLETIGLFMELKGANPFKISAFRKAAAALESDDRSLSEIEDFTKIPGIG CCCCCHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC KGTAAVIQEYIESGTSEVLQELEKEVPSSLLPLLKLPGLGGKKVAKLYKELGVVDMESLK CCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH AVCEENKVQALAGFGKKTEEKILEAIDQVGSRPERLPIAMVLPIAGEIEEKLSNIAEVIR HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH FSRAGSLRRVRETVKDLDFIIATTEPAAVREHLLQFDNMIEVIASGDTKVSVRLQYEYDI HHCCCHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEE SIDFRLVKPEEFITTLHHFTGSKDHNVKMRQIAKDKGEKISEYGVENLETGEVKTFETEE EEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCHH EFFAHFGLPFIPPEVREDGKEIELIKEYPNLIQFSDIQGDLHMHTTWSDGAFSIEEMVQA HHHHHCCCCCCCHHHHCCCCHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHH CRTRGYKFMAITDHSQYLKVANGLTKERLREQAKEIERMNEKYPDITILRGIEMDILPDA HHHCCEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCC SLDFDDEVLAELDYVIGAIHSSFSQDRETIMKRLRAALENKHVTMIAHPTGRLLGRREGY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCC DVDTDLLIELAKETNTVLELNANPNRLDLSAKLLKQAQDAGVKVAINTDAHTLEMLEDME CCCHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH TGVAAARKGWIQKDNVINTWDIERLLDYIKRNK HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MMKVNKKQVIKLLETIGLFMELKGANPFKISAFRKAAAALESDDRSLSEIEDFTKIPGIG CCCCCHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC KGTAAVIQEYIESGTSEVLQELEKEVPSSLLPLLKLPGLGGKKVAKLYKELGVVDMESLK CCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH AVCEENKVQALAGFGKKTEEKILEAIDQVGSRPERLPIAMVLPIAGEIEEKLSNIAEVIR HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH FSRAGSLRRVRETVKDLDFIIATTEPAAVREHLLQFDNMIEVIASGDTKVSVRLQYEYDI HHCCCHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEE SIDFRLVKPEEFITTLHHFTGSKDHNVKMRQIAKDKGEKISEYGVENLETGEVKTFETEE EEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCHH EFFAHFGLPFIPPEVREDGKEIELIKEYPNLIQFSDIQGDLHMHTTWSDGAFSIEEMVQA HHHHHCCCCCCCHHHHCCCCHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHH CRTRGYKFMAITDHSQYLKVANGLTKERLREQAKEIERMNEKYPDITILRGIEMDILPDA HHHCCEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCC SLDFDDEVLAELDYVIGAIHSSFSQDRETIMKRLRAALENKHVTMIAHPTGRLLGRREGY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCC DVDTDLLIELAKETNTVLELNANPNRLDLSAKLLKQAQDAGVKVAINTDAHTLEMLEDME CCCHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH TGVAAARKGWIQKDNVINTWDIERLLDYIKRNK HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]