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The map label for this gene is yrrB [H]

Identifier: 118479553

GI number: 118479553

Start: 4188775

End: 4189443

Strand: Reverse

Name: yrrB [H]

Synonym: BALH_3977

Alternate gene names: 118479553

Gene position: 4189443-4188775 (Counterclockwise)

Preceding gene: 118479554

Following gene: 118479552

Centisome position: 79.69

GC content: 36.92

Gene sequence:

>669_bases
GTGAAGGACATGTCAAACAAACTTGAAACAGGTATTCAATATATGCAAGAAGGAAACTGGGAAGAAGCTGCTAAAAATTT
CACAGAAGCAATCGAAAAAAATCCGAAAGATGCGCTTGGGTATATTAATTTTGCAAACTTATTAGATGTATTAGGTGACA
GTGAGAGAGCAATTTTATTTTATAAACGTGCATTAGAGTTAGATGATAAATCTGCGGCTGCTTATTATGGATTAGGGAAC
GTATATTACGGTCAAGAGCAATTTGCAGAGGCGAAAGCTGTATTTGAACAAGCGATGCAAGCTGGATTACAATCAGCTGA
TGTAACATTTATGCTAGGTATTACGCATGTGCAACTTGGAAATGATCGTCTAGCACTGCCGTTTTTACAAAGAGCAACAG
AATTAGATGAAAACGATGTAGAAGCTGTGTTCCAGTGCGGACTTTGTTTTGCACGATTAGAACATATTCAAGAGGCGAAA
CCTTATTTTGAAAAGGTATTAGAAATGGATGAAGAGCATGCGGATGCGTATTATAATTTAGGTGTTGCGTACGTGTTTGA
AGAAAATAACGAGAAGGCTCTTGCTTTATTTAAGAAAGCAACTGAAATTCAGCCAGATCACTTTTTAGCTGGTAATGGTG
TTCGTTTATTAGAGCAAGAAGCTGAATAA

Upstream 100 bases:

>100_bases
ACGAGAAGCCTCTGCCGATTCGCGGTTAGAGGTTTCTTTTACATAAGGCGAATTTTCGTTCGCTTGGAAAATACATTCTT
TGTTATAATTTGTTGTAGAG

Downstream 100 bases:

>100_bases
GAAAAATATTGTTTAATGGGTAGTTATCCCTCATCTAAAGAGGTGGGGGATGTACTGCTCATTAAAGTGAAACGAAACCG
GAAAGGAGAGGAAAGATGGG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKDMSNKLETGIQYMQEGNWEEAAKNFTEAIEKNPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGN
VYYGQEQFAEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHIQEAK
PYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPDHFLAGNGVRLLEQEAE

Sequences:

>Translated_222_residues
MKDMSNKLETGIQYMQEGNWEEAAKNFTEAIEKNPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGN
VYYGQEQFAEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHIQEAK
PYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPDHFLAGNGVRLLEQEAE
>Mature_222_residues
MKDMSNKLETGIQYMQEGNWEEAAKNFTEAIEKNPKDALGYINFANLLDVLGDSERAILFYKRALELDDKSAAAYYGLGN
VYYGQEQFAEAKAVFEQAMQAGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDENDVEAVFQCGLCFARLEHIQEAK
PYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALALFKKATEIQPDHFLAGNGVRLLEQEAE

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307148, Length=208, Percent_Identity=29.3269230769231, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI32307150, Length=208, Percent_Identity=29.3269230769231, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI115532690, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319589, Length=163, Percent_Identity=27.6073619631902, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24656717, Length=217, Percent_Identity=25.8064516129032, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI18110006, Length=217, Percent_Identity=25.8064516129032, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24647123, Length=200, Percent_Identity=24.5, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17647755, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24585827, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24585829, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 25104; Mature: 25104

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDMSNKLETGIQYMQEGNWEEAAKNFTEAIEKNPKDALGYINFANLLDVLGDSERAILF
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
YKRALELDDKSAAAYYGLGNVYYGQEQFAEAKAVFEQAMQAGLQSADVTFMLGITHVQLG
EHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEC
NDRLALPFLQRATELDENDVEAVFQCGLCFARLEHIQEAKPYFEKVLEMDEEHADAYYNL
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
GVAYVFEENNEKALALFKKATEIQPDHFLAGNGVRLLEQEAE
CEEEEEECCCCHHHHHHHHHHCCCCCCEECCCCHHHHHCCCC
>Mature Secondary Structure
MKDMSNKLETGIQYMQEGNWEEAAKNFTEAIEKNPKDALGYINFANLLDVLGDSERAILF
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
YKRALELDDKSAAAYYGLGNVYYGQEQFAEAKAVFEQAMQAGLQSADVTFMLGITHVQLG
EHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEC
NDRLALPFLQRATELDENDVEAVFQCGLCFARLEHIQEAKPYFEKVLEMDEEHADAYYNL
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
GVAYVFEENNEKALALFKKATEIQPDHFLAGNGVRLLEQEAE
CEEEEEECCCCHHHHHHHHHHCCCCCCEECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]