| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is amyS [H]
Identifier: 118478751
GI number: 118478751
Start: 3322266
End: 3323807
Strand: Reverse
Name: amyS [H]
Synonym: BALH_3143
Alternate gene names: 118478751
Gene position: 3323807-3322266 (Counterclockwise)
Preceding gene: 118478754
Following gene: 118478749
Centisome position: 63.23
GC content: 36.64
Gene sequence:
>1542_bases ATGTTTAAAAAAATAGCAATAGTCGGCTTTTCGGTTGTTTTGTTCTTACCTAGTATATATGGGGGGAGTAAAGTGTATGC AGATACAGTTAACAATGGAACGTTAATGCAGTATTTTGAGTGGTATGCTCCAAATGATGGGAATCATTGGAACCGATTGC ATTCGGATGCTGGAAATTTAGCGCAAAAAGGGATTACATCTGTCTGGATACCGCCTGCATATAAAGGAACTACTCAAAAT GACGTTGGATATGGAGCGTATGATTTATATGATTTAGGAGAATTCAATCAAAAAGGAACGGTGCGGACGAAATATGGGAC AAAAGCACAATTGAAATCTGCAATTGAAGCTTTACATAAGCAAAACATCGATGTATATGGCGATGTAGTTATGAATCATA AAGGTGGAGCAGATTATACTGAAATTGTAACAGCTGTTGAGGTAGACCGTAACAATCGAAATATTGAGGTATCAGGTGAT TATGAAATTAATGCATGGACAGGGTTTAACTTTCCTGGACGTGGAGATAATTATTCTAATTTCAAATGGAAATGGTATCA TTTTGACGGAACGGATTGGGATGAAGGAAGGAAATTAAATCGAATTTATAAATTTAGGGGTATAGGTAAAGCATGGGACT GGGAAGTGTCTAGTGAGAATGGAAATTATGATTATTTGATGTATGCAGATCTTGATTTTGATCATCCAGCTGTTGCGAAT GAGATGAAAAATTGGGGGACGTGGTATGCGAATGAATTAAATTTAGATGGCTTTCGTTTAGATGCTGTTAAACATATTGA TCATGAATATTTACGCGATTGGGTAAATCATGTTAGGCAGCAAACGGGGAAAGAAATGTTTACGGTGGCTGAATATTGGC AAAATGATATCCGAACTTTAAATAATTATTTAGCGAAAGTCAATTATAATCAATCTGTATTTGATGCACCACTGCATTAC AATTTTCATTATGCTTCAAAAGGAAATGGGAATTATGATATGAGAAATATTTTAAATGGAACAGTAATGCAAAATCATCC TGCACTCGCAGTTACTCTTGTTGAGAATCATGATTCTCAGCCTGGTCAGTCATTGGAATCTGTAGTAAGTCCGTGGTTTA AACCGTTGGCATATGCATTTATTTTAACTCGTGCAGAGGGATATCCTTCAGTTTTTTATGGTGATTACTATGGGACAAGC GGAAATAGTAGTTATGAAATTCCAGCGTTAAAAGATAAAATTGATCCGATTTTGACAGCACGAAAAAACTTTGCATATGG TACGCAGCGTGATTATTTAGACCATCCAGATGTGATTGGATGGACAAGAGAAGGTGATAGTGTACATGCTAATTCTGGTT TAGCAACATTAATCTCTGATGGACCGGGAGGATCAAAGTGGATGGATGTTGGAAAGAATAATGCAGGGGAAGTATGGCAT GATATGACGGGTAATCAAACAAATACTGTAACAATTAATAAGGATGGATGGGGGCAATTCCATGTAAGTGGAGGATCAGT TTCTATATATGTTCAGCAGTGA
Upstream 100 bases:
>100_bases TGGAAGAGTGAAAGATTGATACTTTACTAACAGAGGGACGAATATTATAATAATTCTGATAAACTATGCAAACGTTTTCT TAAAAGGGGATGGTATACAG
Downstream 100 bases:
>100_bases ATTGTTAATAGAAAAGAAGAGGTAGACTGAAATATAAGTTTTCCTCTTCTTTTTATATTGTTATCATTCCTAAATCGTTA TTTTAATAAATGAACTAGTC
Product: cytoplasmic alpha-amylase
Products: NA
Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase; BLA [H]
Number of amino acids: Translated: 513; Mature: 513
Protein sequence:
>513_residues MFKKIAIVGFSVVLFLPSIYGGSKVYADTVNNGTLMQYFEWYAPNDGNHWNRLHSDAGNLAQKGITSVWIPPAYKGTTQN DVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLKSAIEALHKQNIDVYGDVVMNHKGGADYTEIVTAVEVDRNNRNIEVSGD YEINAWTGFNFPGRGDNYSNFKWKWYHFDGTDWDEGRKLNRIYKFRGIGKAWDWEVSSENGNYDYLMYADLDFDHPAVAN EMKNWGTWYANELNLDGFRLDAVKHIDHEYLRDWVNHVRQQTGKEMFTVAEYWQNDIRTLNNYLAKVNYNQSVFDAPLHY NFHYASKGNGNYDMRNILNGTVMQNHPALAVTLVENHDSQPGQSLESVVSPWFKPLAYAFILTRAEGYPSVFYGDYYGTS GNSSYEIPALKDKIDPILTARKNFAYGTQRDYLDHPDVIGWTREGDSVHANSGLATLISDGPGGSKWMDVGKNNAGEVWH DMTGNQTNTVTINKDGWGQFHVSGGSVSIYVQQ
Sequences:
>Translated_513_residues MFKKIAIVGFSVVLFLPSIYGGSKVYADTVNNGTLMQYFEWYAPNDGNHWNRLHSDAGNLAQKGITSVWIPPAYKGTTQN DVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLKSAIEALHKQNIDVYGDVVMNHKGGADYTEIVTAVEVDRNNRNIEVSGD YEINAWTGFNFPGRGDNYSNFKWKWYHFDGTDWDEGRKLNRIYKFRGIGKAWDWEVSSENGNYDYLMYADLDFDHPAVAN EMKNWGTWYANELNLDGFRLDAVKHIDHEYLRDWVNHVRQQTGKEMFTVAEYWQNDIRTLNNYLAKVNYNQSVFDAPLHY NFHYASKGNGNYDMRNILNGTVMQNHPALAVTLVENHDSQPGQSLESVVSPWFKPLAYAFILTRAEGYPSVFYGDYYGTS GNSSYEIPALKDKIDPILTARKNFAYGTQRDYLDHPDVIGWTREGDSVHANSGLATLISDGPGGSKWMDVGKNNAGEVWH DMTGNQTNTVTINKDGWGQFHVSGGSVSIYVQQ >Mature_513_residues MFKKIAIVGFSVVLFLPSIYGGSKVYADTVNNGTLMQYFEWYAPNDGNHWNRLHSDAGNLAQKGITSVWIPPAYKGTTQN DVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLKSAIEALHKQNIDVYGDVVMNHKGGADYTEIVTAVEVDRNNRNIEVSGD YEINAWTGFNFPGRGDNYSNFKWKWYHFDGTDWDEGRKLNRIYKFRGIGKAWDWEVSSENGNYDYLMYADLDFDHPAVAN EMKNWGTWYANELNLDGFRLDAVKHIDHEYLRDWVNHVRQQTGKEMFTVAEYWQNDIRTLNNYLAKVNYNQSVFDAPLHY NFHYASKGNGNYDMRNILNGTVMQNHPALAVTLVENHDSQPGQSLESVVSPWFKPLAYAFILTRAEGYPSVFYGDYYGTS GNSSYEIPALKDKIDPILTARKNFAYGTQRDYLDHPDVIGWTREGDSVHANSGLATLISDGPGGSKWMDVGKNNAGEVWH DMTGNQTNTVTINKDGWGQFHVSGGSVSIYVQQ
Specific function: Unknown
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI1788236, Length=492, Percent_Identity=41.869918699187, Blast_Score=393, Evalue=1e-110,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013776 - InterPro: IPR015237 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF09154 DUF1939 [H]
EC number: =3.2.1.1 [H]
Molecular weight: Translated: 58224; Mature: 58224
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKKIAIVGFSVVLFLPSIYGGSKVYADTVNNGTLMQYFEWYAPNDGNHWNRLHSDAGNL CCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEHHEECCCCCCHHHHHHHHHHHH AQKGITSVWIPPAYKGTTQNDVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLKSAIEALHK HHCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHH QNIDVYGDVVMNHKGGADYTEIVTAVEVDRNNRNIEVSGDYEINAWTGFNFPGRGDNYSN CCCCEEEEEEEECCCCCCHHHEEEEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCCCC FKWKWYHFDGTDWDEGRKLNRIYKFRGIGKAWDWEVSSENGNYDYLMYADLDFDHPAVAN CEEEEEECCCCCHHCCCHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEEECCCCCCHHHH EMKNWGTWYANELNLDGFRLDAVKHIDHEYLRDWVNHVRQQTGKEMFTVAEYWQNDIRTL HHHHCCCEEECEECCCCEEEHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH NNYLAKVNYNQSVFDAPLHYNFHYASKGNGNYDMRNILNGTVMQNHPALAVTLVENHDSQ HHHHEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCEEECCCCEEEEEEECCCCC PGQSLESVVSPWFKPLAYAFILTRAEGYPSVFYGDYYGTSGNSSYEIPALKDKIDPILTA CCHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCEECCCCCCCEECCHHHHHHHHHHHH RKNFAYGTQRDYLDHPDVIGWTREGDSVHANSGLATLISDGPGGSKWMDVGKNNAGEVWH HCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEEEECCCCCCHHHCCCCCCCCCCHH DMTGNQTNTVTINKDGWGQFHVSGGSVSIYVQQ CCCCCCCEEEEEECCCCEEEEEECCEEEEEEEC >Mature Secondary Structure MFKKIAIVGFSVVLFLPSIYGGSKVYADTVNNGTLMQYFEWYAPNDGNHWNRLHSDAGNL CCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEHHEECCCCCCHHHHHHHHHHHH AQKGITSVWIPPAYKGTTQNDVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLKSAIEALHK HHCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHH QNIDVYGDVVMNHKGGADYTEIVTAVEVDRNNRNIEVSGDYEINAWTGFNFPGRGDNYSN CCCCEEEEEEEECCCCCCHHHEEEEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCCCC FKWKWYHFDGTDWDEGRKLNRIYKFRGIGKAWDWEVSSENGNYDYLMYADLDFDHPAVAN CEEEEEECCCCCHHCCCHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEEECCCCCCHHHH EMKNWGTWYANELNLDGFRLDAVKHIDHEYLRDWVNHVRQQTGKEMFTVAEYWQNDIRTL HHHHCCCEEECEECCCCEEEHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH NNYLAKVNYNQSVFDAPLHYNFHYASKGNGNYDMRNILNGTVMQNHPALAVTLVENHDSQ HHHHEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCEEECCCCEEEEEEECCCCC PGQSLESVVSPWFKPLAYAFILTRAEGYPSVFYGDYYGTSGNSSYEIPALKDKIDPILTA CCHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCEECCCCCCCEECCHHHHHHHHHHHH RKNFAYGTQRDYLDHPDVIGWTREGDSVHANSGLATLISDGPGGSKWMDVGKNNAGEVWH HCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEEEECCCCCCHHHCCCCCCCCCCHH DMTGNQTNTVTINKDGWGQFHVSGGSVSIYVQQ CCCCCCCEEEEEECCCCEEEEEECCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2418011; 3009417; 14632998; 6334606; 6609154; 2265757; 2540150; 6172418; 11997021; 2394736; 8771184; 10966804; 12736372; 12915728; 7877175; 9551551; 10924103; 12540849 [H]