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The map label for this gene is sigI [H]

Identifier: 118478695

GI number: 118478695

Start: 3268436

End: 3269182

Strand: Reverse

Name: sigI [H]

Synonym: BALH_3081

Alternate gene names: 118478695

Gene position: 3269182-3268436 (Counterclockwise)

Preceding gene: 118478696

Following gene: 118478694

Centisome position: 62.19

GC content: 33.87

Gene sequence:

>747_bases
GTGAAGGAGGCTGGGAGATTACAAGTGTTGAGTTTAGTAATGAAGATCTTAAGAAAACCAAAAATAGAAGATATCGTATA
TAACATACAAAATAACGAAGAAGATAAAGAAGCTTTTATCGTGCAGTATCAGCCGTTTATTAGAAAATCAATCTCGTCTG
TCTGCCGCCGATATATTACAGAACAGGATGATGAATATAGTATTGGATTGTTTGCATTTAACGAAGCAATAGAAAAGTAT
TCATATAAAAAGGGGAAATCTTTTCTAGCGTTTGCTGATCTTCTTATAAAAAGAGATGTAATTGACTATATACGCAAGGA
GTCTAAGCATAACCTTGTCTTTTTAAAAGAAGATGAGCAAGAGGAAATGTTAGAAATGCAAGTATCGCTTACGGAGTATA
TGAAGGAAATAGAGAATGATAACCGTAAGGAAGAAATTCTCCATTTTCAAAGTGTGTTAGCTGAGTTTAAAATCACATTT
TCAGAGCTTGCTAAAGAATCTCCTAAGCATCGTGATACGCGTGAGCACTTAATAGAAATTGTAAAGATGATTATAAAAGA
AGAGGAAATGATGGAGGAGTTGTTCCGAAAGAAAAAGTTACCGCTTAAACATATTGAACCGCGTGTTAGGGTAAGTCGTA
AAACGTTGGAGCGACATAGAAAATATATCATTGCAATGTGTATTATCTTCGCAAATAACTATACATACATTCTTGATTAT
ATAAGGGGAGGGAAGCATGATGAATAA

Upstream 100 bases:

>100_bases
GAAAGTCGTTTTTGAAAAATATGAGCAAGAAGACAAGCTCAAAGAAAAGTACTAACAAAATGTGGTTGAATGGTCACTTG
TTTAGTGACCATTTTGCTAT

Downstream 100 bases:

>100_bases
AGGAATTGTGATGGATATAAAAAAACATAGCGTAGTTGTTTTAACGCCAAATGGAGAGTTTATTACGTGTAAAAGAAAAG
GGGATTCTTGCATGATTGGA

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKEAGRLQVLSLVMKILRKPKIEDIVYNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEKY
SYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENDNRKEEILHFQSVLAEFKITF
SELAKESPKHRDTREHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDY
IRGGKHDE

Sequences:

>Translated_248_residues
MKEAGRLQVLSLVMKILRKPKIEDIVYNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEKY
SYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENDNRKEEILHFQSVLAEFKITF
SELAKESPKHRDTREHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDY
IRGGKHDE
>Mature_248_residues
MKEAGRLQVLSLVMKILRKPKIEDIVYNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEKY
SYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENDNRKEEILHFQSVLAEFKITF
SELAKESPKHRDTREHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDY
IRGGKHDE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 29869; Mature: 29869

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEAGRLQVLSLVMKILRKPKIEDIVYNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYIT
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHC
EQDDEYSIGLFAFNEAIEKYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQ
CCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
EEMLEMQVSLTEYMKEIENDNRKEEILHFQSVLAEFKITFSELAKESPKHRDTREHLIEI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDY
HHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IRGGKHDE
HCCCCCCC
>Mature Secondary Structure
MKEAGRLQVLSLVMKILRKPKIEDIVYNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYIT
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHC
EQDDEYSIGLFAFNEAIEKYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQ
CCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
EEMLEMQVSLTEYMKEIENDNRKEEILHFQSVLAEFKITFSELAKESPKHRDTREHLIEI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDY
HHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IRGGKHDE
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]