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The map label for this gene is ydcM [C]

Identifier: 118478634

GI number: 118478634

Start: 3206775

End: 3207932

Strand: Reverse

Name: ydcM [C]

Synonym: BALH_3015

Alternate gene names: 118478634

Gene position: 3207932-3206775 (Counterclockwise)

Preceding gene: 118478635

Following gene: 118478633

Centisome position: 61.02

GC content: 33.51

Gene sequence:

>1158_bases
ATGAAAAGAGCATATTTAATAGAAATCAAACCGACAACTGAACAAGTTAGTAAAATCCGTCAAACTATTGGGGTGTGTCG
ATATGTATATAACCTGTATATTTCTAAAAATAAAGAGGCATATGAGTCGGAGGGGAAATTTCTTAGTGGCTATGACTTTT
CCAAATGGCTAAACAACATTCATACAAAAGAGTGTGATCAGTGGATTAAAGAAGTGTCGAGCAAAGCGGTAAAACAAGCG
ATTATGAATGGAGATAAAGCTTTTAAGCGATTTTTTAAAGGTTTATCTCAGTTTCCAAGATATAAAAAAAAGAGGAAGCA
AGATGTGAAGTGCTACTTTCCGAAAAACAACAAAACAGATTGGACAGTAGAAAGACATAGAGTAAAAGTCCCTACAATTG
GTTGGATAAGGTTAAAAGAGTATGGATATATCCCTAAAAATGCAACTGTAAAAAGTGGCACAGTATATCAAAGAGCAGGA
AGATATTTTGTATCTGTACTTTGTGAAAGAGCAGAAATAAGGGTAAAACCAATGCTGAATAAAGTAGGTTTAGGGATTGA
TTTAGGACTGAAGGATTTCGCTGTACGTAGCGATGGAAAAACTCATAAAAATATAAATAAAACAGTACAAGTAAAAAAGA
TAGAAAAACGGTTAAAACGTGAACAACGCTCTTTAGCACGTAAATTTGAAAATCTAAAAAAGAGAGGTGGAAAATCTGTT
ACTAATAAAAGAGTGAATATAGATAAAAATGTTCTTAGAGTGCAAAAGTTGCATGCTCGATTAGCGAATATTCGAATAGA
GTATGTAAAGTCTATTGTAACGAATGTGGTGAAAACCAAGCCAACGTTTATTACAGTGGAAGATTTGAATGTGAAAGGTA
TGATGAAGAATAAACATTTATCTAAAACAATTGCCAAGCAGTCTTTTTTTGCTTTTAAAACGTGGCTTTTGACGAAATGT
GAGGAATATGGAATTGAATTACGTCAAGTAGACCGGTTTTATCCATCGTCAAAGTTATGCTCATGTTGCAGTCAAAAGAA
AGCGGATTTAAAGCTATCTGACCGAGTATATACATGTGAATGTGGCAATGTAATGGATAGAGATTTGAACGCAGCGATCA
ACCTTTTACAAGCAAAAGAATATACAATACTAACGTAA

Upstream 100 bases:

>100_bases
AAGAACTTGTTCAGGATTTAATATCTATTATTCATGTATTTAGCTGTAGAATATATGGGTTGAGAAAATACAAAAAGAAA
ATCTCGGACGATGAAGACCT

Downstream 100 bases:

>100_bases
ATAGATTGTATATATGTACGGTGGGCTACATCGGAATTTACGCCTGTGGAGTGTCACAGCAAACTGTAGTAGCAAGTGAT
TAGCGAGGCAGGGCACGTAG

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKRAYLIEIKPTTEQVSKIRQTIGVCRYVYNLYISKNKEAYESEGKFLSGYDFSKWLNNIHTKECDQWIKEVSSKAVKQA
IMNGDKAFKRFFKGLSQFPRYKKKRKQDVKCYFPKNNKTDWTVERHRVKVPTIGWIRLKEYGYIPKNATVKSGTVYQRAG
RYFVSVLCERAEIRVKPMLNKVGLGIDLGLKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLARKFENLKKRGGKSV
TNKRVNIDKNVLRVQKLHARLANIRIEYVKSIVTNVVKTKPTFITVEDLNVKGMMKNKHLSKTIAKQSFFAFKTWLLTKC
EEYGIELRQVDRFYPSSKLCSCCSQKKADLKLSDRVYTCECGNVMDRDLNAAINLLQAKEYTILT

Sequences:

>Translated_385_residues
MKRAYLIEIKPTTEQVSKIRQTIGVCRYVYNLYISKNKEAYESEGKFLSGYDFSKWLNNIHTKECDQWIKEVSSKAVKQA
IMNGDKAFKRFFKGLSQFPRYKKKRKQDVKCYFPKNNKTDWTVERHRVKVPTIGWIRLKEYGYIPKNATVKSGTVYQRAG
RYFVSVLCERAEIRVKPMLNKVGLGIDLGLKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLARKFENLKKRGGKSV
TNKRVNIDKNVLRVQKLHARLANIRIEYVKSIVTNVVKTKPTFITVEDLNVKGMMKNKHLSKTIAKQSFFAFKTWLLTKC
EEYGIELRQVDRFYPSSKLCSCCSQKKADLKLSDRVYTCECGNVMDRDLNAAINLLQAKEYTILT
>Mature_385_residues
MKRAYLIEIKPTTEQVSKIRQTIGVCRYVYNLYISKNKEAYESEGKFLSGYDFSKWLNNIHTKECDQWIKEVSSKAVKQA
IMNGDKAFKRFFKGLSQFPRYKKKRKQDVKCYFPKNNKTDWTVERHRVKVPTIGWIRLKEYGYIPKNATVKSGTVYQRAG
RYFVSVLCERAEIRVKPMLNKVGLGIDLGLKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLARKFENLKKRGGKSV
TNKRVNIDKNVLRVQKLHARLANIRIEYVKSIVTNVVKTKPTFITVEDLNVKGMMKNKHLSKTIAKQSFFAFKTWLLTKC
EEYGIELRQVDRFYPSSKLCSCCSQKKADLKLSDRVYTCECGNVMDRDLNAAINLLQAKEYTILT

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=379, Percent_Identity=28.7598944591029, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44907; Mature: 44907

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAYLIEIKPTTEQVSKIRQTIGVCRYVYNLYISKNKEAYESEGKFLSGYDFSKWLNNI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCCHHHHHHHC
HTKECDQWIKEVSSKAVKQAIMNGDKAFKRFFKGLSQFPRYKKKRKQDVKCYFPKNNKTD
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
WTVERHRVKVPTIGWIRLKEYGYIPKNATVKSGTVYQRAGRYFVSVLCERAEIRVKPMLN
CEEECCEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVGLGIDLGLKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLARKFENLKKRGGKSV
HHCCCEECCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TNKRVNIDKNVLRVQKLHARLANIRIEYVKSIVTNVVKTKPTFITVEDLNVKGMMKNKHL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
SKTIAKQSFFAFKTWLLTKCEEYGIELRQVDRFYPSSKLCSCCSQKKADLKLSDRVYTCE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCEECCCEEEEE
CGNVMDRDLNAAINLLQAKEYTILT
CCCCHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MKRAYLIEIKPTTEQVSKIRQTIGVCRYVYNLYISKNKEAYESEGKFLSGYDFSKWLNNI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCCHHHHHHHC
HTKECDQWIKEVSSKAVKQAIMNGDKAFKRFFKGLSQFPRYKKKRKQDVKCYFPKNNKTD
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
WTVERHRVKVPTIGWIRLKEYGYIPKNATVKSGTVYQRAGRYFVSVLCERAEIRVKPMLN
CEEECCEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVGLGIDLGLKDFAVRSDGKTHKNINKTVQVKKIEKRLKREQRSLARKFENLKKRGGKSV
HHCCCEECCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TNKRVNIDKNVLRVQKLHARLANIRIEYVKSIVTNVVKTKPTFITVEDLNVKGMMKNKHL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
SKTIAKQSFFAFKTWLLTKCEEYGIELRQVDRFYPSSKLCSCCSQKKADLKLSDRVYTCE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCEECCCEEEEE
CGNVMDRDLNAAINLLQAKEYTILT
CCCCHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]