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The map label for this gene is acdA [H]

Identifier: 118478404

GI number: 118478404

Start: 2930308

End: 2931495

Strand: Reverse

Name: acdA [H]

Synonym: BALH_2769

Alternate gene names: 118478404

Gene position: 2931495-2930308 (Counterclockwise)

Preceding gene: 118478405

Following gene: 118478402

Centisome position: 55.76

GC content: 40.15

Gene sequence:

>1188_bases
ATGAACGGTTTAAGAATCGAGCATAAAGGAGATTATAGTATGGCACTCTCATTTGTTGAAACAGAAAAACAATCTTTCAT
TATTGAACAAATAAATAAATTGATTCCGAAGTTCATGGAAAGGGAGCATCAACTAAGTGAATTAGGATCATTTCCGTATG
AAAATATAAATGATTTGAAAGATATCGGATATACGAAATTAACGTTGCCGAAGGAATTTGGTGGTAGTGCGATTTCTTTA
TATGACTTCGTTCTATTTCAAGAGAAAATTGCGGAAGGCTGCGGGGCTACTGCATTATCGATTGGCTGGCATCTTGGCAT
TGTGAAAGAACTAGCGGAAAATCGCTCTTGGAATGATGAGATGTTCAAATGGTTTTGCGAAGAAGTGCGTAGCGGTGCGC
TCTTTAACCGAGCAGCAACAGAACCGAAAACAGGGAGTCCGACGCGTGGTGGAAAACCAGAAACAATAGCGGTTCAACAA
GGTGAGAAGTGGATTATAAATGGAAGGAAAACTTTTACAACGATGGCGCCAGTACTTGATTATTTTATTATTTCAGCGAG
TATGGAAGGCCGTGAAGAAGTTGGTGAGTTTGTTATTCCAAGAAATACACTCGGTGTATCCATTGAAGAAACGTGGGATA
GCGTTGCGATGCGAGGCACTGCTAGTCACGACCTTGTCTTACAAAATGTAGAGATAGAAAGCCGCTTTTTTACGGATGTG
AAAGGCGGGAAAGTGAAACAAAAGGGTATTGGCTGGTTGCTACATATACCAGCATGTTATTTAGGAATTGCACAATCAGC
AAGAAATTATGCAGTTCAGTTTGCGGGATCATACAAGCCGAATAGTTTAAACCATTCTATTAGTTTATTACCGAATGTTA
GAAGATTAGTTGGAGAATTAGAACTCGAGCTTATGCAAGCTCGCGTCTTTTTATATCAAATTGCGAAAAAATATGATGAG
GCAGAAGATAAACTGTCACTGCAAGCAGAATTAGCGGCAGTGAAATACGCCGTAACAAATGCGGCGATATCCATAGTGGA
TAAATCAATGCGCATCGTAGGAGCAAAAAGTTTATCAGAAAAAAATCCGCTTCATCATTACTATTTAAACGTAAGAGCAG
GACTACACAATCCGCCGATGGATGATGCAACACTGTCTATGTTGGCGGATGCGGCGTTTCGATCGTAG

Upstream 100 bases:

>100_bases
TATCTTTCAATAGGAACTTTTCTTATTAGTCAAAAACATTGTATTTTTATCGGAATAGTGAAACAATAGAGAGGTAGCTT
CATATAATCATAATGACAAA

Downstream 100 bases:

>100_bases
GTTTTTTAACTTGAATTTTATTGTTTATGGACAATATAGTTGTTTTGAAAGCACGTGTTTGATTAGTAATCGAACACGTG
CTTTTTATGTGCAGGAACGT

Product: acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNGLRIEHKGDYSMALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSAISL
YDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQ
GEKWIINGRKTFTTMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDV
KGGKVKQKGIGWLLHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDE
AEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHHYYLNVRAGLHNPPMDDATLSMLADAAFRS

Sequences:

>Translated_395_residues
MNGLRIEHKGDYSMALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSAISL
YDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQ
GEKWIINGRKTFTTMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDV
KGGKVKQKGIGWLLHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDE
AEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHHYYLNVRAGLHNPPMDDATLSMLADAAFRS
>Mature_395_residues
MNGLRIEHKGDYSMALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSAISL
YDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQ
GEKWIINGRKTFTTMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDV
KGGKVKQKGIGWLLHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDE
AEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHHYYLNVRAGLHNPPMDDATLSMLADAAFRS

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=332, Percent_Identity=22.289156626506, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI226958412, Length=301, Percent_Identity=23.9202657807309, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI226958414, Length=274, Percent_Identity=23.7226277372263, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17538396, Length=316, Percent_Identity=24.6835443037975, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17508101, Length=358, Percent_Identity=20.391061452514, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17534899, Length=318, Percent_Identity=21.3836477987421, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646207, Length=349, Percent_Identity=24.3553008595989, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21356377, Length=343, Percent_Identity=22.4489795918367, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21355753, Length=316, Percent_Identity=22.4683544303797, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666513, Length=353, Percent_Identity=22.3796033994334, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44183; Mature: 44183

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGLRIEHKGDYSMALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLK
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
DIGYTKLTLPKEFGGSAISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDE
HCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHH
MFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTTMAPVLD
HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHH
YFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDV
HHHHHCCCCCHHHHCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCC
KGGKVKQKGIGWLLHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGEL
CCCEEECCCCCEEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
ELELMQARVFLYQIAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KNPLHHYYLNVRAGLHNPPMDDATLSMLADAAFRS
CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNGLRIEHKGDYSMALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLK
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
DIGYTKLTLPKEFGGSAISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDE
HCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHH
MFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTTMAPVLD
HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHH
YFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIESRFFTDV
HHHHHCCCCCHHHHCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCC
KGGKVKQKGIGWLLHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGEL
CCCEEECCCCCEEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
ELELMQARVFLYQIAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KNPLHHYYLNVRAGLHNPPMDDATLSMLADAAFRS
CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]