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The map label for this gene is lsrD [H]

Identifier: 118478299

GI number: 118478299

Start: 2825059

End: 2826075

Strand: Reverse

Name: lsrD [H]

Synonym: BALH_2661

Alternate gene names: 118478299

Gene position: 2826075-2825059 (Counterclockwise)

Preceding gene: 118478300

Following gene: 118478298

Centisome position: 53.76

GC content: 37.56

Gene sequence:

>1017_bases
GTGGAAGGCCGAAAGGAGGATGAATCTATGAAGTATGTATACAGATGGGAAGGTGTTCTAATCGTATTACTTCTTTTAGA
ATTCATTCTCTTTAGTTTTATAAATAGTGATTTCTTAAATATTAGTAATCTCCTTTTTAGTACAAATGATTTTCTTTTTA
TCGCAATCGCGGCGATACCAATGACTTTCGTTATTGTAACAGGAGGAATTGATGTATCGGTCGGCTCAATAATGGGGCTT
ACTTCAATTTTGATCGGTGTACTTTGGATGAACGAAATATCTATTTTGTTTGCTGTTATAATCGCCCTAATAATTAGTTG
TTTAGCAGGCGCTTTAAACGGACTCATTATAAAAATGACAGATGTAGAACCACTCGTTGTTACACTCGGAACGATGTTTT
TATACGGAGGAATTGCCCTCGTCATTTCAGGAGGGGCGGGTGCTTCTGGGTATGAAGGAATAAGCGGTTTACCAGACGCA
TTTGTACAACTGGCAAATGGTAGTTTTATAGGAATACCGAATTTATTATGGCTACTGATCGTATTAACAGTTTTATGTGC
TGTATTATTTCATCGAACTATATACGGGCGCCATGTAAAATTAACAGGTGCGAACGAGAATACAGCAAAATACACCGGGA
TTAAAACGAAAAAAGTAGTCATTATCGCTTACATACTTTCCGGGTTAGGAGGTGGATTAGGAGGTGCTTTCTTAACCGCA
TATTTTGGTTCCGCACGTGCTGATATGGGAAGTGAAACAATTTTACCAATCATTACAGCAGTCGTATTAGGCGGGACACT
TATTACGGGGGGAAAAGGAAGTATTATTGGTACTGTACTAGCGAGTATTTTTATTGGGCTCATGCAGTATGGCTTGCAAA
TGACGGGTTTAACGAATGAACAATCCAATGTAGTAATAGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAA
TTACATCAATTCTTAGCGGAGAAAAGAAGGAATTTGCATAAGGGGGAAATGTCATGA

Upstream 100 bases:

>100_bases
GCAGTTCACTCGTCTTTCTAAAAATACCAGCATTTTGGAATAATGCTATTTCAGGTTTTTTATTATTACTTATCATCATA
CTGGATAGTGTTATGAAAAA

Downstream 100 bases:

>100_bases
AGAAAAAACTGGAGATTGTATTGATTGTATGTATTTGTTTAATCGGTTTAATTGCGTGTTCTAGCCAAACGGCAGATAAG
AAAAAGGCTGATGATGTGAA

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEGRKEDESMKYVYRWEGVLIVLLLLEFILFSFINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGL
TSILIGVLWMNEISILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDA
FVQLANGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTA
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFK
LHQFLAEKRRNLHKGEMS

Sequences:

>Translated_338_residues
MEGRKEDESMKYVYRWEGVLIVLLLLEFILFSFINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGL
TSILIGVLWMNEISILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDA
FVQLANGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTA
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFK
LHQFLAEKRRNLHKGEMS
>Mature_338_residues
MEGRKEDESMKYVYRWEGVLIVLLLLEFILFSFINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGL
TSILIGVLWMNEISILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDA
FVQLANGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTA
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFK
LHQFLAEKRRNLHKGEMS

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=327, Percent_Identity=42.2018348623853, Blast_Score=241, Evalue=6e-65,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=32.890365448505, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788896, Length=313, Percent_Identity=30.6709265175719, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787793, Length=304, Percent_Identity=30.9210526315789, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=29.5031055900621, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=31.4285714285714, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693152, Length=320, Percent_Identity=27.1875, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=29.296875, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788471, Length=277, Percent_Identity=29.9638989169675, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789992, Length=140, Percent_Identity=29.2857142857143, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36101; Mature: 36101

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGRKEDESMKYVYRWEGVLIVLLLLEFILFSFINSDFLNISNLLFSTNDFLFIAIAAIP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH
MTFVIVTGGIDVSVGSIMGLTSILIGVLWMNEISILFAVIIALIISCLAGALNGLIIKMT
HHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLANGSFIGIPNLLWLLI
CCCHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCEECHHHHHHHHH
VLTVLCAVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTA
HHHHHHHHHHHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNE
HHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCC
QSNVVIGIILILSVIMRHFKLHQFLAEKRRNLHKGEMS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEGRKEDESMKYVYRWEGVLIVLLLLEFILFSFINSDFLNISNLLFSTNDFLFIAIAAIP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH
MTFVIVTGGIDVSVGSIMGLTSILIGVLWMNEISILFAVIIALIISCLAGALNGLIIKMT
HHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLANGSFIGIPNLLWLLI
CCCHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCEECHHHHHHHHH
VLTVLCAVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTA
HHHHHHHHHHHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNE
HHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCC
QSNVVIGIILILSVIMRHFKLHQFLAEKRRNLHKGEMS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA