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The map label for this gene is yocH [H]

Identifier: 118478290

GI number: 118478290

Start: 2812215

End: 2813729

Strand: Reverse

Name: yocH [H]

Synonym: BALH_2651

Alternate gene names: 118478290

Gene position: 2813729-2812215 (Counterclockwise)

Preceding gene: 118478292

Following gene: 118478289

Centisome position: 53.52

GC content: 38.94

Gene sequence:

>1515_bases
ATGGAGGTTAATATGAAAAAAGTAATTGGCGCAGCAACAGCAACTGTTTTCGGATTGGGAGCATTTACTACAACTGCTAC
TGCAGAAACAATCGTAACAGCAGATGTACTCAACGTACGTGAAAAACCGACTACAGAATCAAAAGTGGTCGAAAAAGTAA
AAAACGGGGAAGAGTTAAAAGTCATCAATACCGAAGATGGCTGGTCAAAAATTGAGTTAAATGGTAAAGAAGTATTTGTA
AGCTCGGAGTTTACTAAAGATATTTACCATGTAACAGCAGATTTGTTAAATGTACGTTCTGAATCAAACACAGAATCAAA
AATTCTTGGCAGACTGAAAAAAGATGATGTAATTGAATCAACGAACCAAGTAAAAGACGGATGGCTACAATTTGAGTATA
AGGGAAAAACAGCTTATGTAAATGTTTCTTTCTTATCAAGTAAAGCACCAATTGAAAAAAAGGCTGACGAGAAAACGAAG
CAAGTAGCGAAAGTACAAAAATCGGTTAAAGCTAAGGAAGAAGCTAAAACACAGAAGATAACAAAGGCAAAAGAAACAAT
AAAACCTAAGGAAGAAGTGAAAGTCCAAGAAGTAGTAAAACCTAAGGAAGAAGTGAAAGTCCAAGAAGTAGCGAAACCTA
AGGAAGAAGTGAAAGTCCAAGAAGTAGCGAAACCTAAGGAAGAAGTGAAAGTCCAAGAAGTAGCGAAACCTAAGGAAGAA
GTGAAAGTCCAAGAAGTAGCGAAACCTAAGGAAGAAGTGAAAGTCCAAGAAGTAGTAAAACCTAAGGAAGAAGTGAAAGT
CCAAGAAGTAGCTAAAGCTAAGGAAGAAGCAAAAGTGCAAGAGATAGCCAAAGCTAAGGAAGAGGCGAAAGCACAAGAAA
TAGCCAAAGCTAAGGAAGAGGCGAAAGCACAAGAAATAGCAAAGGCTAAGGAAGAAGCAAAAGCGCAAGAAATAGCCAAA
GCTAAGGAAGAGGCGAAAGCACAAGAAATAGCAAAGGCTAAGGAAGAAGCGAAAGCACGAGAAATAGCAAAGGCTAAGGA
AGAAGCGAAAGCACAAGAAATAGCAAAGGCTAAGGAAGAGGAGAAAGCACGAGAAATAGCAAAGGCTAAGGAAGAAGCAA
AAGCGCAAGAAATAGCCAAAGCTAAGGAAGAGGCGAAAGTACGAGAAGCACTAAAGGCAAAAGAAGAGTCTAAAAATAAC
GCGCAGTCTGCTAAACGTGAATTAATGGTCGTGGCGACAGCATATACCGCTGATCCGAGTGAGAATGGTACATATGGTGG
ACGCGTTTTAACTGCGATGGGGCATGATTTAACGGCTAATCCGAATATGAGAATTATCGCAGTAGATCCGAAAGTAATCC
CATTAGGATCTAAAGTATGGGTAGAAGGTTATGGAGAAGCAATCGCTGGAGATACCGGAAGTGCAATTAAAGGTAATCGC
ATTGATGTATTAATGGGTTCAAAAAGTAAAGCGATGAATTGGGGAAGACAAACTGTTAAAGTTAAAATTCTTTAA

Upstream 100 bases:

>100_bases
TTTAATAGCAGTATATTAAATGGTATCAATATACTGTTGCGAATGCTTTTATTAAATCTCTTGATTTGATGGAAGTATTT
GATAGAATTCAAAAAATATA

Downstream 100 bases:

>100_bases
TAAATATAGTTATCTAGATGGAAGTCAGTTCTCTTTATTGAGGCTGACTTTTATTTTTGAGTAAACATAATTGATACTAG
GAAAGAAAAAGTAAATATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MEVNMKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINTEDGWSKIELNGKEVFV
SSEFTKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTK
QVAKVQKSVKAKEEAKTQKITKAKETIKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQEVAKPKEE
VKVQEVAKPKEEVKVQEVVKPKEEVKVQEVAKAKEEAKVQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAK
AKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEEEKAREIAKAKEEAKAQEIAKAKEEAKVREALKAKEESKNN
AQSAKRELMVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNR
IDVLMGSKSKAMNWGRQTVKVKIL

Sequences:

>Translated_504_residues
MEVNMKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINTEDGWSKIELNGKEVFV
SSEFTKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTK
QVAKVQKSVKAKEEAKTQKITKAKETIKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQEVAKPKEE
VKVQEVAKPKEEVKVQEVVKPKEEVKVQEVAKAKEEAKVQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAK
AKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEEEKAREIAKAKEEAKAQEIAKAKEEAKVREALKAKEESKNN
AQSAKRELMVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNR
IDVLMGSKSKAMNWGRQTVKVKIL
>Mature_504_residues
MEVNMKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELKVINTEDGWSKIELNGKEVFV
SSEFTKDIYHVTADLLNVRSESNTESKILGRLKKDDVIESTNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTK
QVAKVQKSVKAKEEAKTQKITKAKETIKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQEVAKPKEE
VKVQEVAKPKEEVKVQEVVKPKEEVKVQEVAKAKEEAKVQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAK
AKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEEEKAREIAKAKEEAKAQEIAKAKEEAKVREALKAKEESKNN
AQSAKRELMVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNR
IDVLMGSKSKAMNWGRQTVKVKIL

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 55521; Mature: 55521

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVNMKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE
VINTEDGWSKIELNGKEVFVSSEFTKDIYHVTADLLNVRSESNTESKILGRLKKDDVIES
EEECCCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
TNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTKQVAKVQKSVKAKEEAKTQKI
HHHHCCCEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAKETIKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQEVAKPKEE
HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHH
VKVQEVAKPKEEVKVQEVVKPKEEVKVQEVAKAKEEAKVQEIAKAKEEAKAQEIAKAKEE
HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKAREIAKAKEEAKAQEIAKAKEEAKVREALKAKEESKNNAQSAKRELMVVATAYTADPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEEEEEECCCC
ENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNR
CCCCCCCEEEEECCCCCCCCCCEEEEEECCEEEECCCEEEECCCCCHHCCCCCCCCCCCE
IDVLMGSKSKAMNWGRQTVKVKIL
EEEEECCCHHHHHCCCEEEEEEEC
>Mature Secondary Structure
MEVNMKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGEELK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE
VINTEDGWSKIELNGKEVFVSSEFTKDIYHVTADLLNVRSESNTESKILGRLKKDDVIES
EEECCCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
TNQVKDGWLQFEYKGKTAYVNVSFLSSKAPIEKKADEKTKQVAKVQKSVKAKEEAKTQKI
HHHHCCCEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAKETIKPKEEVKVQEVVKPKEEVKVQEVAKPKEEVKVQEVAKPKEEVKVQEVAKPKEE
HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHH
VKVQEVAKPKEEVKVQEVVKPKEEVKVQEVAKAKEEAKVQEIAKAKEEAKAQEIAKAKEE
HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKAREIAKAKEEAKAQEIAKAKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKAREIAKAKEEAKAQEIAKAKEEAKVREALKAKEESKNNAQSAKRELMVVATAYTADPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEEEEEECCCC
ENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPLGSKVWVEGYGEAIAGDTGSAIKGNR
CCCCCCCEEEEECCCCCCCCCCEEEEEECCEEEECCCEEEECCCCCHHCCCCCCCCCCCE
IDVLMGSKSKAMNWGRQTVKVKIL
EEEEECCCHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]