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The map label for this gene is atoC [C]

Identifier: 118478188

GI number: 118478188

Start: 2707155

End: 2708816

Strand: Direct

Name: atoC [C]

Synonym: BALH_2545

Alternate gene names: 118478188

Gene position: 2707155-2708816 (Clockwise)

Preceding gene: 118478176

Following gene: 118478189

Centisome position: 51.5

GC content: 36.64

Gene sequence:

>1662_bases
ATGGCATTCTCATTTCCCACAATAAAAGAATTTCTAAAAACATTATCTATTGATCATACATATAGCACTCAACACATTGA
ACAAGTTGACGAAAAATTTTATTACCGACCTTCTACTACAGAAGAATATAATTGTGCAGTTATATATGAAGATGATTCGT
TCACCACTTTAATTGACGGGGTTTCCAATGAACTAGCCGTTATCATATTGAACCGAAATAAAGAGCCTATATGCTGTATA
ACAGCACAGCAAATCATTCCGTTTCTTGTTAAGTCTTACAATGAACTCCAATCTTTTTATAACACCGTAATACAAACTAC
TGATTCTTCTGTTACAGTCATCGATGATAAAGAATGTGTTCGTACCTGGACAGATGGCGCCGAAAAGATTTTTTCAGTCA
AGCATAATGAAATTATCGGGCAACCTATCACTCGCTTTTTTGACTATAAAGATTTGGAAATTTTGCAATCATTACATGAC
GGAAAAAGCATAATCGCTCAGTTCCATCAACCTCGGCCTGATCTGTTCGTATTAATTAATTCAAACCCAGTTTATTGTAA
CGATGAAATTATAGGAGCAGTTGTCTCTGAAACTGATGTTACGAATCAAGTCGCTTTAAATGAAAAACTATTTAATATGT
CACATGAAATGCACCGTTTAGAACAAGAGGTCGCAAAGTATAAAGATGAATCAGACCCTTTCCTTGTGATGAATGGAAAG
AGCCCCGTTATACAAAGAACGATACAATTAGCTAGAAAGGTTTGTTCGGTGAAATCAACTGTTTTAATACTCGGCGAAAG
TGGTGTTGGAAAAGAAGTATTTGCGAAAGCAATTCATGATGCAAGTGAAGCAGCTAAAGCTCCATTCATTTCAATTAACT
GCGGCGCAATTCCAGAAGCATTATTTGAAAGTGAGTTATTCGGCTATGAGCGCGGGGCGTTTTCTGGTGCAAATAGCAAA
GGGAAAAAGGGTAAAATAGAGCTCGCGCAAGGCGGCACATTATTCCTTGATGAAATAGGCGAAATGCCGCTCGATATGCA
AGTAAAACTTTTACGTGTACTACAAGAAAGAAAATATTACCGAGTTGGTGGAGAAAAAGAGATTCATATTGATTTTCGTA
TTATCGCTGCTACAAATCGTGATTTACAAGAAGAAATGAAAAAAGGCACGTTTCGAGAAGATTTATACTATCGTCTAAAT
GTCGTTAGCTTGCATATTCCACCGCTGCGGGAAAGACGCGAAGATATCATTGAATTAACCTACTCTTTCTTAAACGATTT
TTCAATCAACTATAACAGACCAATTCGCGACTTACCGTCCAGCATTATGCATGAACTGCTTCATTACAATTGGCCAGGTA
ATATTCGCGAGCTCCGTAACGTTGTTGAAAGACTTGTCGTATTTGCGACTGACGGTATTATAAAACAAGAATATTTACCA
TTTCATACAACTGAAACTTTAGAGGAACATTCGGCTCATTCCCTATTACTCAGCAACAATAATACAATCCTCTCTTTACA
AGAAGAGATGGAGGAACATGAGAAAAAAGTCATTGAGAGGGCTTTACGCATTTTGAATGGGAATAAATTAGAATGTGCGA
AACAGCTTGGTGTTACAAGGGCCACTTTATATAACCGTTTAAAAAAACTTGGATTACAATAA

Upstream 100 bases:

>100_bases
AAACAATATTTTTATTTGTAAAAATATTTTAAATTTATCGTAAATAAGTGTATTATTTTTTTATCACTGTCAAAATTTTT
ATACATAACAGGAGGATAAT

Downstream 100 bases:

>100_bases
ACCTTCCCTCCTCTATATTGGCATAGTTTTTGCATTATATAATTTGTGCAAACCGAACTAGAGGAGGAATACATATGACG
AATAAAGACCACTTAATTGT

Product: sigma-54-dependent transcriptional activator

Products: NA

Alternate protein names: (S)-limonene 6-monooxygenase; (S)-limonene 7-monooxygenase; Carveol dehydrogenase; Perillyl-alcohol dehydrogenase [H]

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MAFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDGVSNELAVIILNRNKEPICCI
TAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD
GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLVMNGK
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSK
GKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLN
VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ

Sequences:

>Translated_553_residues
MAFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDGVSNELAVIILNRNKEPICCI
TAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD
GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLVMNGK
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSK
GKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLN
VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ
>Mature_552_residues
AFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDGVSNELAVIILNRNKEPICCIT
AQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDG
KSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLVMNGKS
PVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKG
KKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNV
VSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPF
HTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ

Specific function: Involved in limonene hydroxylation to a mixture of carveol and perillyl alcohol as well as in dehydrogenation of these products to carvone and perillyl aldehyde. Aromatic alcohols containing an isopropyl or isopropenyl group at ring position 4 also served

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=313, Percent_Identity=47.9233226837061, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1790437, Length=313, Percent_Identity=46.3258785942492, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1790299, Length=420, Percent_Identity=38.3333333333333, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1789233, Length=475, Percent_Identity=36.6315789473684, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI87082117, Length=317, Percent_Identity=43.8485804416404, Blast_Score=256, Evalue=2e-69,
Organism=Escherichia coli, GI1788905, Length=310, Percent_Identity=44.5161290322581, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1786524, Length=330, Percent_Identity=42.7272727272727, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1789087, Length=349, Percent_Identity=40.6876790830946, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI87082152, Length=324, Percent_Identity=40.7407407407407, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1787583, Length=382, Percent_Identity=35.6020942408377, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI87081872, Length=338, Percent_Identity=37.8698224852071, Blast_Score=188, Evalue=9e-49,
Organism=Escherichia coli, GI87081858, Length=456, Percent_Identity=27.1929824561404, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI1789828, Length=246, Percent_Identity=35.3658536585366, Blast_Score=149, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: =1.14.13.48; =1.14.13.49; =1.1.1.243; =1.1.1.144 [H]

Molecular weight: Translated: 63359; Mature: 63228

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDG
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCHHHHHC
VSNELAVIILNRNKEPICCITAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECV
CCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDGKSIIAQFHQPRPDLFVLIN
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEC
SNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLVMNGK
CCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEA
CHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYY
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHCCCCCCHHHHHHHHHHHCCCE
RVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNVVSLHIPPLRERREDIIELT
ECCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHH
YSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCC
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTR
CCCHHHHHHCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
ATLYNRLKKLGLQ
HHHHHHHHHHCCC
>Mature Secondary Structure 
AFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDG
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCHHHHHC
VSNELAVIILNRNKEPICCITAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKECV
CCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDGKSIIAQFHQPRPDLFVLIN
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEC
SNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLVMNGK
CCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEA
CHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYY
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHCCCCCCHHHHHHHHHHHCCCE
RVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNVVSLHIPPLRERREDIIELT
ECCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHH
YSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCC
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTR
CCCHHHHHHCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
ATLYNRLKKLGLQ
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA