Click here to switch to the map view.

The map label for this gene is yrbD [H]

Identifier: 118478182

GI number: 118478182

Start: 2699807

End: 2701315

Strand: Reverse

Name: yrbD [H]

Synonym: BALH_2539

Alternate gene names: 118478182

Gene position: 2701315-2699807 (Counterclockwise)

Preceding gene: 118478183

Following gene: 118478181

Centisome position: 51.38

GC content: 37.44

Gene sequence:

>1509_bases
ATGATAAGGGGGATTTGGATGGAGCAATTAGTAGAGTGGTTAGTAGGGCAAGTGTGGAGTATTGGTTTAGTTGTTTTCGC
GTTAGGAGCAGGTGTGTATTTTACAATTGCAACTCGTTTTCTTCAAATTCGTTATTTTAAAGAGATGATTAAACTATTAT
TTGAAGGGAAGAGCTCAGAAACGGGAATATCATCCTTTCAAGCATTTTGTTTAGCTTTATCAGGTAGGGTTGGAATAGGT
AATATTGCAGGGGTCGCGACAGCTATCGCTTTTGGCGGGCCTGGAGCTGTATTTTGGATGTGGGTAATGGCTCTTTTAGG
AGCAGCTAGTGCCTTTGTCGAATCAACATTATCTCAAATATATAAAAGTAAAGTTGGAAATGAATATCGCGGTGGTACAC
CGTATTTCATTGAAAAAGGCTTAAACATGAAATGGTTTGCAGTCATTGTAGCGGTCGTTGTAACACTTTCATATGGTGTT
TTATTACCAGGTATTCAATCTAGTAGTATCGCAGTTGGATTCGAAAACTCTAATGGGATTAGCAAATATATAACTGGTAT
CTTGTTAGTTGTATTATTAGCAGCAATTATTTTTGGTGGCGTAAAGAGAATTGCTGGCGTTTCTCAAATGCTCGTTCCAT
TTATGGCAATTGGTTATGTAATTGTTACATGTATCGTATTAATTGCGAATGTAACAGAAATCCCAAGTATGTTCGCTTTA
ATTTTCTCAAGTGCTTTTGGTGTGAATGAAATGTTTGGTGGAATCGTCGGTGCAGCAATCGCGTGGGGCGTAAAGCGCGC
TGTATTTTCTAACGTTGCTGGCGTTGGAGAAGCGACGTATAGTTCGGCCGCGGCTGAAGTATCTCATCCAGCAAAACAAG
GGTTAGTTCAAGCATTTTCTGTATACATTGATACAATTGTCGTATGTACAGCGACAGCTCTTATGATCTTAATAACAGGT
ATGTATAATGTTATACCTGAAGGGAAAAGCGCTATCGTAAAGAATATAGGGAATGTTGATGCGGGTCCAATTTATACACA
ACAAGCAGTTGAAACTGTTATGACAGGGTTTGGTCCATTATTCATTTCAATCGCAATTTTCTTCTTCGCATTTACAACAT
TACTTGCATACTACTATATCGCTGAAACGACACTTACTTATTTAGACCGTGAACTTAAGCATAGTTGGTTAAAACCAGTT
TTGAAAATTGGATTTTTAATTATGGTTTACATCGGTAGTGTAGAATCAGCATCGCTTTTATGGAATCTTGGAGATTTAGG
AATCGGTAGTATGGCATGGTTAAACTTAATCGCGATTCTACTATTAAGTAAAATCGCATTAAAAGTGTTAAAAGATTATG
AAACGCAGAAAAAAGAAGGGAAAGATCCCGTGTTTGATCCTAAAAATGTGGGAATTGAAGGTTTAACATTTTGGGAAGAA
AGAAGTAAAGAGGTTGCAAGAAAAAACTCAAAAGAACAAGCGGTAGTGGATGATAGTCTGAAATTGTAG

Upstream 100 bases:

>100_bases
ATATAAAGTAATAGAGAGATGAAATAATGAGATAGACGGACAACTGGAAGTTTTAATAATAGTTGTCCGTTTTCTTATAT
ATAAAATAGTTTTCTAAAGA

Downstream 100 bases:

>100_bases
TTTTAATAAACAGAATATTCATTCTATTTAGTGAGGTATATTGCCTTCCTTTCATCACATACTACAATAGGTACAGATAA
TTTGAATGGAGGGAATAATA

Product: sodium/proton-dependent alanine carrier protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MIRGIWMEQLVEWLVGQVWSIGLVVFALGAGVYFTIATRFLQIRYFKEMIKLLFEGKSSETGISSFQAFCLALSGRVGIG
NIAGVATAIAFGGPGAVFWMWVMALLGAASAFVESTLSQIYKSKVGNEYRGGTPYFIEKGLNMKWFAVIVAVVVTLSYGV
LLPGIQSSSIAVGFENSNGISKYITGILLVVLLAAIIFGGVKRIAGVSQMLVPFMAIGYVIVTCIVLIANVTEIPSMFAL
IFSSAFGVNEMFGGIVGAAIAWGVKRAVFSNVAGVGEATYSSAAAEVSHPAKQGLVQAFSVYIDTIVVCTATALMILITG
MYNVIPEGKSAIVKNIGNVDAGPIYTQQAVETVMTGFGPLFISIAIFFFAFTTLLAYYYIAETTLTYLDRELKHSWLKPV
LKIGFLIMVYIGSVESASLLWNLGDLGIGSMAWLNLIAILLLSKIALKVLKDYETQKKEGKDPVFDPKNVGIEGLTFWEE
RSKEVARKNSKEQAVVDDSLKL

Sequences:

>Translated_502_residues
MIRGIWMEQLVEWLVGQVWSIGLVVFALGAGVYFTIATRFLQIRYFKEMIKLLFEGKSSETGISSFQAFCLALSGRVGIG
NIAGVATAIAFGGPGAVFWMWVMALLGAASAFVESTLSQIYKSKVGNEYRGGTPYFIEKGLNMKWFAVIVAVVVTLSYGV
LLPGIQSSSIAVGFENSNGISKYITGILLVVLLAAIIFGGVKRIAGVSQMLVPFMAIGYVIVTCIVLIANVTEIPSMFAL
IFSSAFGVNEMFGGIVGAAIAWGVKRAVFSNVAGVGEATYSSAAAEVSHPAKQGLVQAFSVYIDTIVVCTATALMILITG
MYNVIPEGKSAIVKNIGNVDAGPIYTQQAVETVMTGFGPLFISIAIFFFAFTTLLAYYYIAETTLTYLDRELKHSWLKPV
LKIGFLIMVYIGSVESASLLWNLGDLGIGSMAWLNLIAILLLSKIALKVLKDYETQKKEGKDPVFDPKNVGIEGLTFWEE
RSKEVARKNSKEQAVVDDSLKL
>Mature_502_residues
MIRGIWMEQLVEWLVGQVWSIGLVVFALGAGVYFTIATRFLQIRYFKEMIKLLFEGKSSETGISSFQAFCLALSGRVGIG
NIAGVATAIAFGGPGAVFWMWVMALLGAASAFVESTLSQIYKSKVGNEYRGGTPYFIEKGLNMKWFAVIVAVVVTLSYGV
LLPGIQSSSIAVGFENSNGISKYITGILLVVLLAAIIFGGVKRIAGVSQMLVPFMAIGYVIVTCIVLIANVTEIPSMFAL
IFSSAFGVNEMFGGIVGAAIAWGVKRAVFSNVAGVGEATYSSAAAEVSHPAKQGLVQAFSVYIDTIVVCTATALMILITG
MYNVIPEGKSAIVKNIGNVDAGPIYTQQAVETVMTGFGPLFISIAIFFFAFTTLLAYYYIAETTLTYLDRELKHSWLKPV
LKIGFLIMVYIGSVESASLLWNLGDLGIGSMAWLNLIAILLLSKIALKVLKDYETQKKEGKDPVFDPKNVGIEGLTFWEE
RSKEVARKNSKEQAVVDDSLKL

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=482, Percent_Identity=36.7219917012448, Blast_Score=280, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 54213; Mature: 54213

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCCCCHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]