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The map label for this gene is glcR [H]

Identifier: 118478127

GI number: 118478127

Start: 2648983

End: 2649753

Strand: Reverse

Name: glcR [H]

Synonym: BALH_2484

Alternate gene names: 118478127

Gene position: 2649753-2648983 (Counterclockwise)

Preceding gene: 118478129

Following gene: 118478126

Centisome position: 50.4

GC content: 33.33

Gene sequence:

>771_bases
ATGTTTACTGAAGAGCGTAGAGAGAAAATTTTAGAGTTACTTAAGAAAAATGGAAGGGTAATTGCAAAGGATCTTGCGGA
AAGTTTCGATATGTCTATCGATTCTATAAGAAGAGATTTGTCTATTATGGAGAAGGATGGCTTGTTAAAAAGAACACATG
GAGGAGCAATTGAACTTGCTAGAGTAAGGAATTTAGCTACCAAGCCATTGAAACGTTATAGTAATGGTTCTGTATATGAA
GACGCAATTGCAAAAATCGCAGCTTCTTATATACAAGAAGGAGATTCCGTTTTTATTGGTGGAGCTTCTATTCATTATGC
CATGTTAAAATATTTACCTGAAACATCATTTACAGTTATTACGAATGCTTTAGAAATTGCTAGTACGTTACGGGAATATA
AGAACATTGATATGTACTTAATTGGTGGAATGGTGAAACCATCAGGAAATATGACAGATACACTTGCCTCAGAGTTGATA
AGTAGATTTTCTATTGATCTTAATTTCTCTACAGGTGGTGGCATTTCATTAAACGGTATAAGTACTGCAACACCGGAAGT
TGCTTTTTTTAGTAAAACAGTAAGTAAGATTGCTAGAAGAAATATTTGTTTAGCTCCTCATAATAAACTTGGAATAGACT
ACTTTATAAAAGGAGAGTCACTGATTGAAATTGACCTTATAATAACAGATTCGGAGGCTAGTAAAGAAACGATTCAAGAA
TTTGAGAAACAAGGTAAAGAAATTGTAATAGCACCAATAGACTGCATTTAA

Upstream 100 bases:

>100_bases
CGGAGTGAATAAGAATTGAAAATATTGTAAAGCGGAAGAGACATGCATATAATTAAAATAAGGATAAGATTTCAGAATCT
TCAATAACGGCGGTGGACAC

Downstream 100 bases:

>100_bases
AAGGAGTTTGTAATGATTATAAAAGGACAGGAGTTTCACATAAATAGATTAACTTATACAATTCGTTCTGCAGCTGAAAC
AGATGCGGAACAGTTATCGG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MFTEERREKILELLKKNGRVIAKDLAESFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELARVRNLATKPLKRYSNGSVYE
DAIAKIAASYIQEGDSVFIGGASIHYAMLKYLPETSFTVITNALEIASTLREYKNIDMYLIGGMVKPSGNMTDTLASELI
SRFSIDLNFSTGGGISLNGISTATPEVAFFSKTVSKIARRNICLAPHNKLGIDYFIKGESLIEIDLIITDSEASKETIQE
FEKQGKEIVIAPIDCI

Sequences:

>Translated_256_residues
MFTEERREKILELLKKNGRVIAKDLAESFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELARVRNLATKPLKRYSNGSVYE
DAIAKIAASYIQEGDSVFIGGASIHYAMLKYLPETSFTVITNALEIASTLREYKNIDMYLIGGMVKPSGNMTDTLASELI
SRFSIDLNFSTGGGISLNGISTATPEVAFFSKTVSKIARRNICLAPHNKLGIDYFIKGESLIEIDLIITDSEASKETIQE
FEKQGKEIVIAPIDCI
>Mature_256_residues
MFTEERREKILELLKKNGRVIAKDLAESFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELARVRNLATKPLKRYSNGSVYE
DAIAKIAASYIQEGDSVFIGGASIHYAMLKYLPETSFTVITNALEIASTLREYKNIDMYLIGGMVKPSGNMTDTLASELI
SRFSIDLNFSTGGGISLNGISTATPEVAFFSKTVSKIARRNICLAPHNKLGIDYFIKGESLIEIDLIITDSEASKETIQE
FEKQGKEIVIAPIDCI

Specific function: Plays a role in carbon catabolite repression (CCR). Specifically required for transcriptional repression of the levanase operon by glucose but not by other sugars [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=30.7086614173228, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=24.5059288537549, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI226510968, Length=253, Percent_Identity=26.4822134387352, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790635, Length=250, Percent_Identity=24.8, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789829, Length=247, Percent_Identity=25.9109311740891, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082344, Length=229, Percent_Identity=26.2008733624454, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790753, Length=252, Percent_Identity=25.7936507936508, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788069, Length=243, Percent_Identity=26.7489711934156, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787540, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789170, Length=177, Percent_Identity=27.1186440677966, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28312; Mature: 28312

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTEERREKILELLKKNGRVIAKDLAESFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELA
CCCHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEHHH
RVRNLATKPLKRYSNGSVYEDAIAKIAASYIQEGDSVFIGGASIHYAMLKYLPETSFTVI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCHHHH
TNALEIASTLREYKNIDMYLIGGMVKPSGNMTDTLASELISRFSIDLNFSTGGGISLNGI
HHHHHHHHHHHHHHCCCEEEECCEECCCCCCHHHHHHHHHHHHEEEEEECCCCCEEECCC
STATPEVAFFSKTVSKIARRNICLAPHNKLGIDYFIKGESLIEIDLIITDSEASKETIQE
CCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCEEEEEEEEECCCCCHHHHHH
FEKQGKEIVIAPIDCI
HHHCCCEEEEEECCCC
>Mature Secondary Structure
MFTEERREKILELLKKNGRVIAKDLAESFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELA
CCCHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEHHH
RVRNLATKPLKRYSNGSVYEDAIAKIAASYIQEGDSVFIGGASIHYAMLKYLPETSFTVI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCHHHH
TNALEIASTLREYKNIDMYLIGGMVKPSGNMTDTLASELISRFSIDLNFSTGGGISLNGI
HHHHHHHHHHHHHHCCCEEEECCEECCCCCCHHHHHHHHHHHHEEEEEECCCCCEEECCC
STATPEVAFFSKTVSKIARRNICLAPHNKLGIDYFIKGESLIEIDLIITDSEASKETIQE
CCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCEEEEEEEEECCCCCHHHHHH
FEKQGKEIVIAPIDCI
HHHCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]