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The map label for this gene is yciR [C]

Identifier: 118477933

GI number: 118477933

Start: 2445642

End: 2447129

Strand: Direct

Name: yciR [C]

Synonym: BALH_2279

Alternate gene names: 118477933

Gene position: 2445642-2447129 (Clockwise)

Preceding gene: 118477932

Following gene: 118477934

Centisome position: 46.52

GC content: 34.34

Gene sequence:

>1488_bases
TTGGAAGCAGCTCTAAAGATGGGGAAACGATGTAGTTCGTCTTCGTTACAGTTACGTGTGAAAAATAATAATGAGAAGGA
TATACATTTTTGGTACGTTACGATTGTTCCTATCATGATAGAAGGACAAACTTTTGGGAGTTATGTAATGGTAAAAGACA
TTACGAGAATGAAGCAGCAACAAGATAAGATAAACTATCTAGCATTCCATGATACAGTGACGGAGATTGGAAATCGAATA
TTCTTCCAACAAGAATTAGAAAAATCCATTGAGCGTGCACAAAAAACGCAGGGTGAATTTGGCCTCTTGTATATAGATCT
AAATCGTTTTAAGACCATTAATGATACAATGGGACATTCAATCGGTGACAGTGTTTTAAAAGAAGTTGCTAAACGTTTTA
GGGCATATCTGTCACCGTCTATTCCTCTAGCGAGAATAGGGGGAGATGAGTTTGCAATTATAGTCCATAATCATACAGAG
CAACAGCAATTGGATTTATGTGAAAATCTGTTTCGTATAACTAAAAAACCATTTGTAGTAAATCAGCATAGTTTTTACTT
ATCTCTTAGTATAGGAATAGCAGTGTATCCGTTTGGAGGAATAAATACTACTACACTTTTACAACACGCTGATATCGCTA
TGTATAGTGCAAAGGAAAAAGGTAACAATGCTGTTTGTATGTATGACGAGACATTATCTCAAAAAGTAACTCGTCGATTA
CGATTAGAACAGGATTTACCAAATGCAATTGAAAATAATGAATTGTTTTTATTGTATCAACCACAAATTGATAGTAAGGC
AGGTAAGGTTATTGGTGCAGAGGCTTTAATACGTTGGCAACATCCAGAGCTTGGGCTGATTTCTCCTTTTGAGTTTATAC
CTATAGCAGAAGAAACGTCGCAGATTATTTCAATTGGGAAGTGGACGTTACAGGAAGCGTGTCGGCAACTGAAAGAATGG
CATTCTGCAGGCTATTCAAATTTAAAGATGGGGATAAATTTATCAGCTATAGAGTTTGAACAGAAGGGCTTTGTTCAAAC
AGTCATATCTATTATAGAAGAAGTAGGGGTACCAGCTAACTCGATTGATTTGGAATTAACAGAGCGTATTGCCATGGTAG
ATGAAAAAGAAACTTTATCGAAGTTAAAAGCATTAAAATCATATGGTGTACATTTATCAATTGATGATTTTGGTACAGGC
TATTCTTCATTAGCGTATTTACCTTTGTATCCAATTGATACTTTGAAAATTCCAAGAGAATTTGTGAATAGGATTGGAAC
TTCAAATGATGGAGATGAAATTATACAAACTATTATTTCGTTAGCCCATACTTTAAATATGAAAGTAATAGCAGAAGGGG
TAGAAACGAAGGAGCAATTAATAGTGTTACAACAAAATGCATGTTATCTAATTCAAGGGTATTACTACAGTAAGCCTGTA
AATGAAGATGAATTTATTAATTTTTTAAATACGCCACAAAACAAATAA

Upstream 100 bases:

>100_bases
AAATATAAACCAGTCTGGAAGTATATTATTAGGAAAAGATAGTGCAGCATTAATAGGAAAAGAGTGCTTTTCTATTTTTT
TAGATGAAGATAAATCTGAA

Downstream 100 bases:

>100_bases
GTCAAAAAAATATATATGAATTAAAGTGAGAAGACGTTCTACTCATATGGAGTAGAACGTTTTTCTTATAATTATTTTCA
GCAGATATGCCGTTAGGTTT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MEAALKMGKRCSSSSLQLRVKNNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRI
FFQQELEKSIERAQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRAYLSPSIPLARIGGDEFAIIVHNHTE
QQQLDLCENLFRITKKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRL
RLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEW
HSAGYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTG
YSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLIVLQQNACYLIQGYYYSKPV
NEDEFINFLNTPQNK

Sequences:

>Translated_495_residues
MEAALKMGKRCSSSSLQLRVKNNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRI
FFQQELEKSIERAQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRAYLSPSIPLARIGGDEFAIIVHNHTE
QQQLDLCENLFRITKKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRL
RLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEW
HSAGYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTG
YSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLIVLQQNACYLIQGYYYSKPV
NEDEFINFLNTPQNK
>Mature_495_residues
MEAALKMGKRCSSSSLQLRVKNNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRI
FFQQELEKSIERAQKTQGEFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRAYLSPSIPLARIGGDEFAIIVHNHTE
QQQLDLCENLFRITKKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRL
RLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEW
HSAGYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTG
YSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLIVLQQNACYLIQGYYYSKPV
NEDEFINFLNTPQNK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=34.5794392523364, Blast_Score=288, Evalue=6e-79,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=33.6405529953917, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI226510982, Length=448, Percent_Identity=27.6785714285714, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=35.0393700787402, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=35.0393700787402, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=32.6359832635983, Blast_Score=152, Evalue=7e-38,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=35.2, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=32.6693227091633, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787055, Length=328, Percent_Identity=31.7073170731707, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI87081743, Length=255, Percent_Identity=32.156862745098, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788381, Length=244, Percent_Identity=27.0491803278689, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788849, Length=439, Percent_Identity=26.879271070615, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=35.3658536585366, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87082096, Length=251, Percent_Identity=25.4980079681275, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1786584, Length=193, Percent_Identity=25.9067357512953, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=33.7278106508876, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787262, Length=205, Percent_Identity=29.2682926829268, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=31.2169312169312, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87082007, Length=185, Percent_Identity=28.1081081081081, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787802, Length=197, Percent_Identity=27.4111675126904, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=212, Percent_Identity=26.8867924528302, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1789650, Length=452, Percent_Identity=20.5752212389381, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1787410, Length=117, Percent_Identity=31.6239316239316, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 56241; Mature: 56241

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAALKMGKRCSSSSLQLRVKNNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQ
CCCHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCEEHHHHHHHHHHH
QDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQGEFGLLYIDLNRFKTINDTMGHS
HHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEHHHHHCCH
IGDSVLKEVAKRFRAYLSPSIPLARIGGDEFAIIVHNHTEQQQLDLCENLFRITKKPFVV
HHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
NQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRL
ECCEEEEEEEEEEEEEECCCCCHHHHHHHCCCCEEECCCCCCCEEEEEHHHHHHHHHHHH
RLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETS
HHHHCCCCHHCCCCEEEEECCCCCCCCCCEEECHHEEEECCCCCCCCCCCCEEECHHHHH
QIISIGKWTLQEACRQLKEWHSAGYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPAN
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECEEEEEEEECHHHHHHHHHHHHHHHCCCCC
SIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPRE
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHEEEEECCCCCHHHCCHH
FVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLIVLQQNACYLIQGYYYSKPV
HHHHCCCCCCHHHHHHHHHHHHHHCCHHEECCCCCCCEEEEEEECCCEEEEEEEEECCCC
NEDEFINFLNTPQNK
CHHHHHHHCCCCCCC
>Mature Secondary Structure
MEAALKMGKRCSSSSLQLRVKNNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQ
CCCHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCEEHHHHHHHHHHH
QDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQGEFGLLYIDLNRFKTINDTMGHS
HHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEHHHHHCCH
IGDSVLKEVAKRFRAYLSPSIPLARIGGDEFAIIVHNHTEQQQLDLCENLFRITKKPFVV
HHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
NQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRL
ECCEEEEEEEEEEEEEECCCCCHHHHHHHCCCCEEECCCCCCCEEEEEHHHHHHHHHHHH
RLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETS
HHHHCCCCHHCCCCEEEEECCCCCCCCCCEEECHHEEEECCCCCCCCCCCCEEECHHHHH
QIISIGKWTLQEACRQLKEWHSAGYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPAN
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECEEEEEEEECHHHHHHHHHHHHHHHCCCCC
SIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPRE
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHEEEEECCCCCHHHCCHH
FVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLIVLQQNACYLIQGYYYSKPV
HHHHCCCCCCHHHHHHHHHHHHHHCCHHEECCCCCCCEEEEEEECCCEEEEEEEEECCCC
NEDEFINFLNTPQNK
CHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]