Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 118477930

GI number: 118477930

Start: 2441158

End: 2441793

Strand: Direct

Name: ycdC [C]

Synonym: BALH_2276

Alternate gene names: 118477930

Gene position: 2441158-2441793 (Clockwise)

Preceding gene: 118477929

Following gene: 118477932

Centisome position: 46.44

GC content: 31.92

Gene sequence:

>636_bases
GTGAAATATATATTATTTGAGGTGTGTGAAATGGGGAAATCTCGAGAGCAGACGATGGAAAATATTTTGAAGGCTGCTAA
GAAAAAATTTGGAGAGCGTGGTTACGAAGGTACGAGCATACAAGAAATTGCAAAAGAAGCGAAAGTAAATGTCGCTATGG
CTTCATACTATTTTAATGGGAAAGAAAACCTGTATTATGAGGTATTTAAGAAATATGGCCTTGCTAATGAGTTACCTAAT
TTTCTTGAGAAGAATCAATTTAATCCTATTAATGCTCTAAGAGAATATTTAGCAGTCTTTACTACACATATAAAAGAAAA
TCCTGAAATTGGCACATTGGCATATGAGGAGATTATTAAGGAAAGTGCAAGATTAGAAAAGATTAAACCGTATTTTATAG
GTAGTTTTGAACAGTTAACAGAAATATTGCAGGAAGGGGAAAAACAAGGAGTATTTCATTTCTTTTCTATAAATCATACG
ATACATTGGATCACTTCTATTGTTTTATTTCCAAAGTTTAAAAAGTTCATTGATTCTTTAGGACCAAATGAAACGAATGA
TACAAATCATGAATGGATGCCAGAAGATTTGGTGAGCAGAATTATTTCTGCTTTAACAGATAAGCCTAATATGTAA

Upstream 100 bases:

>100_bases
AGTAATGAAGACCTCATCGGTTGTTAAGTTACTACTTTAAATATATAATTAAATTTCATTAAAAAGAAACTCTATTCAAA
TTCCTTATTGGATTTTTGAA

Downstream 100 bases:

>100_bases
ATTACTCATTGTTTATGAATCCTAATTTTCTTGTTAAAAAGCCTAATTTCTCAATGGATTGTAGAGAAATTAGGCTTTTT
TGGATACTTCATTCAAATAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKYILFEVCEMGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPN
FLEKNQFNPINALREYLAVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLTEILQEGEKQGVFHFFSINHT
IHWITSIVLFPKFKKFIDSLGPNETNDTNHEWMPEDLVSRIISALTDKPNM

Sequences:

>Translated_211_residues
MKYILFEVCEMGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPN
FLEKNQFNPINALREYLAVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLTEILQEGEKQGVFHFFSINHT
IHWITSIVLFPKFKKFIDSLGPNETNDTNHEWMPEDLVSRIISALTDKPNM
>Mature_211_residues
MKYILFEVCEMGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLANELPN
FLEKNQFNPINALREYLAVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLTEILQEGEKQGVFHFFSINHT
IHWITSIVLFPKFKKFIDSLGPNETNDTNHEWMPEDLVSRIISALTDKPNM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24570; Mature: 24570

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYILFEVCEMGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNG
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECC
KENLYYEVFKKYGLANELPNFLEKNQFNPINALREYLAVFTTHIKENPEIGTLAYEEIIK
CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ESARLEKIKPYFIGSFEQLTEILQEGEKQGVFHFFSINHTIHWITSIVLFPKFKKFIDSL
HHHHHHHHCHHHCCCHHHHHHHHHCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHC
GPNETNDTNHEWMPEDLVSRIISALTDKPNM
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKYILFEVCEMGKSREQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNG
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECC
KENLYYEVFKKYGLANELPNFLEKNQFNPINALREYLAVFTTHIKENPEIGTLAYEEIIK
CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ESARLEKIKPYFIGSFEQLTEILQEGEKQGVFHFFSINHTIHWITSIVLFPKFKKFIDSL
HHHHHHHHCHHHCCCHHHHHHHHHCCHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHC
GPNETNDTNHEWMPEDLVSRIISALTDKPNM
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA