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The map label for this gene is ydcN [H]

Identifier: 118477836

GI number: 118477836

Start: 2331808

End: 2332422

Strand: Direct

Name: ydcN [H]

Synonym: BALH_2177

Alternate gene names: 118477836

Gene position: 2331808-2332422 (Clockwise)

Preceding gene: 118477834

Following gene: 118477838

Centisome position: 44.36

GC content: 33.01

Gene sequence:

>615_bases
GTGCTTTTTATTATACATAACGGTCGTTATATTGTATATAGTGTAGGGGTGTTTCTTATGGAAGAAATTCAACTTATTTT
GGCGAAAAATTTAAAGACAATACGAGAGAAGGAAAAGTTAAGTTTAGAAAAGGTTTCCCAATTAACAGGTGTGAGTAAAA
CGATGATTGGACAAATTGAACGAGGAGAGTCAAGTCCAACATTAACAACGATATGGAAAATTGCGAATGGTTTAAAAGTG
TCTTTTACTTCTTTAATCAATAATCCGCAACCGGATACGAAAGTTATTTTACGAAATGATATTCAAGTATTATCAGAAGA
CAGTGGGAGATATAAAGTGTATCCTTCTTTTCCTTTCCAAGATGATAGGAACTTTGAAATCTATACGGTTGAAATTGAAG
CAGAAGGAAAATTAAGTTCGGAAGGACATAAAGAAGGGACCGAAGAATTTATAACAGTGTTTGAAGGAGAATTGACAATT
GAAATAAATGATTGTCAATATAAATTAAATAGTGGGGATGCAATTCGCTTTAAGGCGGATAGACCACATACGTATCATAA
TTTTGGAAGAACGCTAACGCGGTTAAGTATGACCATTTATTATTCAGCTTCATAA

Upstream 100 bases:

>100_bases
AGCTACTTATAAAAACAAATAACAAAAAAGAAAATATAGGCATTTCAAAACCCCCTAATTATTTTGTGTGTTATAATGAC
CGAAAAGAACAATATAACGT

Downstream 100 bases:

>100_bases
ATTTACAGCTGACTTAAAAAACATAGAAAGGGGTAATGGTAAAACCATCTATAAGAGATGGTTTTATTTTTTATAATTCA
CAAAAAAAGACACTCATTTG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MLFIIHNGRYIVYSVGVFLMEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKV
SFTSLINNPQPDTKVILRNDIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTI
EINDCQYKLNSGDAIRFKADRPHTYHNFGRTLTRLSMTIYYSAS

Sequences:

>Translated_204_residues
MLFIIHNGRYIVYSVGVFLMEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKV
SFTSLINNPQPDTKVILRNDIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTI
EINDCQYKLNSGDAIRFKADRPHTYHNFGRTLTRLSMTIYYSAS
>Mature_204_residues
MLFIIHNGRYIVYSVGVFLMEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKV
SFTSLINNPQPDTKVILRNDIQVLSEDSGRYKVYPSFPFQDDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTI
EINDCQYKLNSGDAIRFKADRPHTYHNFGRTLTRLSMTIYYSAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=185, Percent_Identity=34.5945945945946, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787557, Length=180, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 23329; Mature: 23329

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFIIHNGRYIVYSVGVFLMEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIE
CEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
RGESSPTLTTIWKIANGLKVSFTSLINNPQPDTKVILRNDIQVLSEDSGRYKVYPSFPFQ
CCCCCCCCEEEEEHHCCCEEEEHHHHCCCCCCCEEEEECCEEEEECCCCCEEEEECCCCC
DDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTIEINDCQYKLNSGDAIRFKAD
CCCCEEEEEEEEEECCCCCCCCCCCCHHHEEEEECCEEEEEEECEEEEECCCCEEEEECC
RPHTYHNFGRTLTRLSMTIYYSAS
CCCCHHHHHHHEEEEEEEEEEECC
>Mature Secondary Structure
MLFIIHNGRYIVYSVGVFLMEEIQLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIE
CEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
RGESSPTLTTIWKIANGLKVSFTSLINNPQPDTKVILRNDIQVLSEDSGRYKVYPSFPFQ
CCCCCCCCEEEEEHHCCCEEEEHHHHCCCCCCCEEEEECCEEEEECCCCCEEEEECCCCC
DDRNFEIYTVEIEAEGKLSSEGHKEGTEEFITVFEGELTIEINDCQYKLNSGDAIRFKAD
CCCCEEEEEEEEEECCCCCCCCCCCCHHHEEEEECCEEEEEEECEEEEECCCCEEEEECC
RPHTYHNFGRTLTRLSMTIYYSAS
CCCCHHHHHHHEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]