| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is yocR [H]
Identifier: 118477647
GI number: 118477647
Start: 2129572
End: 2130912
Strand: Direct
Name: yocR [H]
Synonym: BALH_1977
Alternate gene names: 118477647
Gene position: 2129572-2130912 (Clockwise)
Preceding gene: 118477646
Following gene: 118477648
Centisome position: 40.51
GC content: 35.35
Gene sequence:
>1341_bases ATGAAACAAACGGAGCAATGGACTTCGAAATTAGGTTTTATAATGGCTGCAGCAGGATCAGCAATTGGACTAGGTGCAAT ATGGAAGTTTCCTTATATCGCCGGGAAGAGCGGGGGAGGGGCATTCTTTTTAATCTTTATATTATTTACTGTATTAATTG GATTACCACTACTTATAGCTGAATTTATGATTGGACGTAGCACGCAGAAACAAGCAGTTGGCGCATTTAAAAGTATTGCA CCAAATACAGGGTGGCACTGGATTGGACGCCTTGGCGTAGGAACGTGTTTTATATTACTTTCGTTTTATAGTGTTGTAGG TGGATGGGTATTCATTTATTTATTCAGAGGAGTAACTGGACAACTTATTACTCCAGGACAAAATTACGGTGCGTTGTTTA CTGAAACAATTGGAAATCCCGCTTGGGCTATTTTGGGACATTTCGCTTTTATGTTCATTACGATTTGGGTTGTATCAAAA GGTGTACAAAACGGAATTGAAAAAGCAAGTAAATATATGTTACCAGCGTTGTTCGTTTTATTTGTGGCTCTTATTGTTCG TTCATTAACACTTGATAATGCGATACAGGGTGTGAAGTTTTTCTTGCAACCAGATTTTTCAAAGATTACTTCAGAAAGTA TTTTGTTCGCAATGGGCCAATCATTCTTTGCGATTAGTATCGGGATTTCTATTATGGTTACGTATAGTTCCTATTTAAAT AAAAAAGAAAGTTTACCAAAATCAGCAATAACAATTGTTGGATTGAATTTATTTGTTTCATTATTTGCGGGTCTTGCTAT TTTTCCGGCCGTATTTTCATTAGGAATGGAGCCGACAGAAGGGCCTGGATTATTATTTATCGTATTACCATCAGTATTTA GTCAAATTCCATTTGGTGGTTTTTTCTTAACAGTATTTCTTGCACTATTTACATTTGCGACATTAACATCGGCATTTTCT TTACTAGAGACAGTTGTTTCAGCATTAGCAAATGGAGAACAAGAAAGAAGAACAAAGTTATCATGGATGATCGGTTTCTG CATTTTCTTAGTAGGTATACCATCAGCTTTATCATTTGGAGTATGGAGTGATATTACGATTTTCGGAAAGAATATTTTTG ATGCTGTAGACTTCTTATCTAGTAATATATTAATGCCACTTGGTGCACTATTCATTAGTATTTTTGTTTCATTCAAAATG GAAAAGAAGGTGCTAGAAGCAGAGTTTTTTGTAGGTGGTAATTATGGAAAGAAAGTATTTACTTGTTGGGCGTTTTTACT TCGATTTGTAGCGCCGCTCGCAATAATTATCGTCTTTTTAAATGTAATAGGGGTTATTTAA
Upstream 100 bases:
>100_bases CCATTTTTTATTTTATAGAAAAAGAAATGGAGGGTTTATTTGGATAGGTTCATAAAATTTATTTATTTATATAAAAAGAT TTAATTAGGAGGAAAATAAG
Downstream 100 bases:
>100_bases GAATAAATGTTATAATATTCAGTAAAAAAGGCGATGTTTATGGCCGATTTGATAGAAACAGGGAAATACATGAATATTAG AGGGAAAAAGCTATACGTTG
Product: sodium-dependent transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTVLIGLPLLIAEFMIGRSTQKQAVGAFKSIA PNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTGQLITPGQNYGALFTETIGNPAWAILGHFAFMFITIWVVSK GVQNGIEKASKYMLPALFVLFVALIVRSLTLDNAIQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGGFFLTVFLALFTFATLTSAFS LLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFGVWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKM EKKVLEAEFFVGGNYGKKVFTCWAFLLRFVAPLAIIIVFLNVIGVI
Sequences:
>Translated_446_residues MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTVLIGLPLLIAEFMIGRSTQKQAVGAFKSIA PNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTGQLITPGQNYGALFTETIGNPAWAILGHFAFMFITIWVVSK GVQNGIEKASKYMLPALFVLFVALIVRSLTLDNAIQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGGFFLTVFLALFTFATLTSAFS LLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFGVWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKM EKKVLEAEFFVGGNYGKKVFTCWAFLLRFVAPLAIIIVFLNVIGVI >Mature_446_residues MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTVLIGLPLLIAEFMIGRSTQKQAVGAFKSIA PNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTGQLITPGQNYGALFTETIGNPAWAILGHFAFMFITIWVVSK GVQNGIEKASKYMLPALFVLFVALIVRSLTLDNAIQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGGFFLTVFLALFTFATLTSAFS LLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFGVWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKM EKKVLEAEFFVGGNYGKKVFTCWAFLLRFVAPLAIIIVFLNVIGVI
Specific function: Putative sodium-dependent transporter [H]
COG id: COG0733
COG function: function code R; Na+-dependent transporters of the SNF family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]
Homologues:
Organism=Homo sapiens, GI21361581, Length=481, Percent_Identity=25.3638253638254, Blast_Score=129, Evalue=8e-30, Organism=Homo sapiens, GI4507041, Length=403, Percent_Identity=25.0620347394541, Blast_Score=126, Evalue=4e-29, Organism=Homo sapiens, GI188528618, Length=434, Percent_Identity=25.8064516129032, Blast_Score=125, Evalue=9e-29, Organism=Homo sapiens, GI171184408, Length=412, Percent_Identity=25.7281553398058, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI171184406, Length=412, Percent_Identity=25.7281553398058, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI171184404, Length=412, Percent_Identity=25.7281553398058, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI7657587, Length=387, Percent_Identity=25.0645994832041, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI289191351, Length=404, Percent_Identity=26.7326732673267, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI4557046, Length=404, Percent_Identity=26.7326732673267, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI289191377, Length=418, Percent_Identity=26.555023923445, Blast_Score=116, Evalue=4e-26, Organism=Homo sapiens, GI134304856, Length=413, Percent_Identity=24.9394673123487, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI197276623, Length=380, Percent_Identity=26.0526315789474, Blast_Score=113, Evalue=4e-25, Organism=Homo sapiens, GI54607094, Length=380, Percent_Identity=26.0526315789474, Blast_Score=113, Evalue=4e-25, Organism=Homo sapiens, GI4507043, Length=382, Percent_Identity=25.130890052356, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI194018524, Length=298, Percent_Identity=27.1812080536913, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI58219014, Length=300, Percent_Identity=25.6666666666667, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI33354281, Length=297, Percent_Identity=23.9057239057239, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI51468073, Length=297, Percent_Identity=24.9158249158249, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI67782317, Length=429, Percent_Identity=22.8438228438228, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI11181770, Length=295, Percent_Identity=25.4237288135593, Blast_Score=99, Evalue=6e-21, Organism=Homo sapiens, GI67782313, Length=429, Percent_Identity=22.8438228438228, Blast_Score=99, Evalue=9e-21, Organism=Homo sapiens, GI67782315, Length=429, Percent_Identity=22.8438228438228, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI12408638, Length=272, Percent_Identity=25.7352941176471, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI21361693, Length=112, Percent_Identity=33.9285714285714, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI92859670, Length=266, Percent_Identity=24.4360902255639, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI197276625, Length=121, Percent_Identity=35.5371900826446, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI55749589, Length=291, Percent_Identity=24.7422680412371, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI300360519, Length=242, Percent_Identity=26.8595041322314, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI289191353, Length=222, Percent_Identity=28.3783783783784, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI5032097, Length=118, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI218563756, Length=118, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI6005715, Length=200, Percent_Identity=26.5, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI25146584, Length=406, Percent_Identity=25.3694581280788, Blast_Score=116, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17555248, Length=397, Percent_Identity=24.6851385390428, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17554804, Length=477, Percent_Identity=23.6897274633124, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI133952791, Length=172, Percent_Identity=30.8139534883721, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71998244, Length=357, Percent_Identity=24.0896358543417, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17542050, Length=118, Percent_Identity=30.5084745762712, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI17136952, Length=376, Percent_Identity=23.936170212766, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI281364394, Length=376, Percent_Identity=23.6702127659574, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI28574704, Length=376, Percent_Identity=23.6702127659574, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI17136950, Length=376, Percent_Identity=23.6702127659574, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI28574702, Length=376, Percent_Identity=23.6702127659574, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI24762620, Length=415, Percent_Identity=26.2650602409639, Blast_Score=126, Evalue=3e-29, Organism=Drosophila melanogaster, GI24639514, Length=503, Percent_Identity=23.6580516898608, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI24652942, Length=427, Percent_Identity=24.5901639344262, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI45551088, Length=427, Percent_Identity=24.5901639344262, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI221329674, Length=503, Percent_Identity=23.6580516898608, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24661428, Length=495, Percent_Identity=23.8383838383838, Blast_Score=111, Evalue=9e-25, Organism=Drosophila melanogaster, GI24582567, Length=479, Percent_Identity=25.0521920668058, Blast_Score=109, Evalue=5e-24, Organism=Drosophila melanogaster, GI19921936, Length=495, Percent_Identity=24.2424242424242, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI24639516, Length=523, Percent_Identity=22.7533460803059, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI281365034, Length=503, Percent_Identity=23.4592445328032, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=24.5791245791246, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI19921352, Length=509, Percent_Identity=23.5756385068762, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24584353, Length=509, Percent_Identity=23.5756385068762, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI281363702, Length=477, Percent_Identity=22.0125786163522, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI45551183, Length=268, Percent_Identity=27.6119402985075, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI45550877, Length=208, Percent_Identity=30.7692307692308, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI281363700, Length=339, Percent_Identity=25.3687315634218, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24654186, Length=286, Percent_Identity=26.5734265734266, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI281364136, Length=176, Percent_Identity=30.6818181818182, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24582569, Length=447, Percent_Identity=23.489932885906, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000175 [H]
Pfam domain/function: PF00209 SNF [H]
EC number: NA
Molecular weight: Translated: 48626; Mature: 48626
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTVLIGLPLLIA CCCHHHHHHHHHHHHHHCCCHHCHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH EFMIGRSTQKQAVGAFKSIAPNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTG HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QLITPGQNYGALFTETIGNPAWAILGHFAFMFITIWVVSKGVQNGIEKASKYMLPALFVL CEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVALIVRSLTLDNAIQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEHHHHHHC KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGG HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCCH FFLTVFLALFTFATLTSAFSLLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC VWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKMEKKVLEAEFFVGGNYGKKVF CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH TCWAFLLRFVAPLAIIIVFLNVIGVI HHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKQTEQWTSKLGFIMAAAGSAIGLGAIWKFPYIAGKSGGGAFFLIFILFTVLIGLPLLIA CCCHHHHHHHHHHHHHHCCCHHCHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH EFMIGRSTQKQAVGAFKSIAPNTGWHWIGRLGVGTCFILLSFYSVVGGWVFIYLFRGVTG HHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QLITPGQNYGALFTETIGNPAWAILGHFAFMFITIWVVSKGVQNGIEKASKYMLPALFVL CEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVALIVRSLTLDNAIQGVKFFLQPDFSKITSESILFAMGQSFFAISIGISIMVTYSSYLN HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEHHHHHHC KKESLPKSAITIVGLNLFVSLFAGLAIFPAVFSLGMEPTEGPGLLFIVLPSVFSQIPFGG HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHCCCCH FFLTVFLALFTFATLTSAFSLLETVVSALANGEQERRTKLSWMIGFCIFLVGIPSALSFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC VWSDITIFGKNIFDAVDFLSSNILMPLGALFISIFVSFKMEKKVLEAEFFVGGNYGKKVF CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH TCWAFLLRFVAPLAIIIVFLNVIGVI HHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]