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The map label for this gene is rpoE [H]

Identifier: 118477553

GI number: 118477553

Start: 2026676

End: 2027281

Strand: Direct

Name: rpoE [H]

Synonym: BALH_1878

Alternate gene names: 118477553

Gene position: 2026676-2027281 (Clockwise)

Preceding gene: 118477550

Following gene: 118477554

Centisome position: 38.55

GC content: 31.35

Gene sequence:

>606_bases
TTGTGTAAGACAAAGGAGGGCTGGAATATGAAGGGTGAAATAGATAACACACATTTAATCCAATTAACTTTATCGGGCAA
TAAAGAAGCGTATAGCGAATTGTATGATAAAACAATCCAAGAAGTATATAAAACAGTACATTTTTTGATTGAAGATAAAA
CGGATGTAGATGATGTCGTTCAAGAAATATACATACAGCTATATGAATCGCTTCGTAAGTATGATAGCGAGAAGCCATTT
CGTCCTTGGCTAATTGGACTTGCAATTAAACAAATTCATTCTTATAGAAGAAAGAGGTGGATGCGACTACGAATTATAAA
AAAAGCAGAAGAGCAAAGAAAACCGGTACAAATTGATTTTTCTAACGATCTTATAAGTAAAATATCAAACCAAAAATTAA
TCGAACTTATTCATAAATTACCGTATAAATTGAAACAAGTTATTATCTTAAGATACTTACACGATTACTCTCAAGAAGAA
GTAGCACAAATATTACATATTCCAATTGGTACTGTGAAATCTAGAATTCACGCAGCATTAAAAAAACTACGTCAAAAAGA
GCAAATAGAAGAAATCTTTTTAGGAGAGGTAGGGAATGTGAAATGA

Upstream 100 bases:

>100_bases
AAGGTTATAAGTGAAGCTTATGAACGCATTGAATCATTATATTAATTTATATAAAATTTTCTAGAAAAATCGAACGAAAT
ATAAATTACTTACCAATATA

Downstream 100 bases:

>100_bases
GTTTAGATTGTAGAGTTAGAGAATCTATACAAGAAGAAGCGAAGGGGATTGTTGCCCCGCCGGAGTTGAAAGAAAAAGTA
ATCGTTCAAATAAAAATGAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MCKTKEGWNMKGEIDNTHLIQLTLSGNKEAYSELYDKTIQEVYKTVHFLIEDKTDVDDVVQEIYIQLYESLRKYDSEKPF
RPWLIGLAIKQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDLISKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEE
VAQILHIPIGTVKSRIHAALKKLRQKEQIEEIFLGEVGNVK

Sequences:

>Translated_201_residues
MCKTKEGWNMKGEIDNTHLIQLTLSGNKEAYSELYDKTIQEVYKTVHFLIEDKTDVDDVVQEIYIQLYESLRKYDSEKPF
RPWLIGLAIKQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDLISKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEE
VAQILHIPIGTVKSRIHAALKKLRQKEQIEEIFLGEVGNVK
>Mature_201_residues
MCKTKEGWNMKGEIDNTHLIQLTLSGNKEAYSELYDKTIQEVYKTVHFLIEDKTDVDDVVQEIYIQLYESLRKYDSEKPF
RPWLIGLAIKQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDLISKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEE
VAQILHIPIGTVKSRIHAALKKLRQKEQIEEIFLGEVGNVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=187, Percent_Identity=27.807486631016, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23946; Mature: 23946

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCKTKEGWNMKGEIDNTHLIQLTLSGNKEAYSELYDKTIQEVYKTVHFLIEDKTDVDDVV
CCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QEIYIQLYESLRKYDSEKPFRPWLIGLAIKQIHSYRRKRWMRLRIIKKAEEQRKPVQIDF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
SNDLISKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAQILHIPIGTVKSRIHAAL
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHH
KKLRQKEQIEEIFLGEVGNVK
HHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MCKTKEGWNMKGEIDNTHLIQLTLSGNKEAYSELYDKTIQEVYKTVHFLIEDKTDVDDVV
CCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QEIYIQLYESLRKYDSEKPFRPWLIGLAIKQIHSYRRKRWMRLRIIKKAEEQRKPVQIDF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
SNDLISKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAQILHIPIGTVKSRIHAAL
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHH
KKLRQKEQIEEIFLGEVGNVK
HHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]