Click here to switch to the map view.

The map label for this gene is yvbU [H]

Identifier: 118477377

GI number: 118477377

Start: 1849411

End: 1850280

Strand: Direct

Name: yvbU [H]

Synonym: BALH_1696

Alternate gene names: 118477377

Gene position: 1849411-1850280 (Clockwise)

Preceding gene: 118477375

Following gene: 118477378

Centisome position: 35.18

GC content: 36.44

Gene sequence:

>870_bases
ATGACCATTACACAACTGCAAGTATTAATAAAAACTATTGAGTTAGGTAGTTTTACGAAGGCAGCTCGGGTGTTAAATAT
GACGCAGCCAGCTGTAAGTCATGCGATTTCAAGTATTGAGTCAGAGTTAGGAGTTACGATTCTTATACGTGATAAACGAA
AAGGGTTAATTGTTACGGATGTAGGAAGCAGAATTCTTGTACATATTAGAGAGATTTTGAACGGTGTAGAGAAGATTGAA
CAAGAAGTTGCGATGGAGAAAGGACACGAAGTTGGGACGATTCGAATTGGGAGTTTTCCGAGTGCTTCTGCACATTTCTT
ACCGAAAATGATAAACCATTTTAAGGAGAAGTATCCGAACTTAGAAGTCGTTCTTTATGAAGGAACGATTAAAGAAGTTG
AAGATTGGTTAGTATCGAGGGTTGTTGATATAGGGATTGTTATTTTACCTAATAAAGAGATGGAGATTGTTCCATTAACG
AAGGGAAAAATGGTTGTTATTTTAAGAGAGGATCATCCTCTTTGCAAGAAGAACGCTATTACAATTCGTGATTTGGAGAA
TGAACCGATCATATTATGTAAGGGCGGATACGAACCACCTATTATCGATATGTTTAAACAAATAAATGTACCACTTCGAG
CTGAGTATGTAATTTCGACAGTTACGACAGCTTTAAATATGATTCAAGAAGGGTTAGGTATTGCAATATTAGCTGAATTA
TCTTTAACGAATTTACCAAAAAATGTGCAAACGAGAGAATTGGAACCGCAAGTATGGAGAGAAATTGCTTTAGCTGTTCC
TTCACTAAAGGATTCTTCAATCGCTGTGCAGCTATTTATTGAAGAATTTCAGGCGCTATTTGCAGAATAA

Upstream 100 bases:

>100_bases
CACTGTAAGACCTCCTTGATGTTATTCATTTCACTATGATATGATATCGACTGTAATAAATAAAATGAATCTTTTTTATG
AGGAGTATAAGTGATTAGTT

Downstream 100 bases:

>100_bases
AAAGAGGTGTCTCGTATATTATAATGGGACACTTTTTAATTTACTTATAAAAAATATGTGAAAAGGATTGACTTATTTTT
TAGTTGTAACTATAATAATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKNAITIRDLENEPIILCKGGYEPPIIDMFKQINVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE

Sequences:

>Translated_289_residues
MTITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKNAITIRDLENEPIILCKGGYEPPIIDMFKQINVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE
>Mature_288_residues
TITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQ
EVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTK
GKMVVILREDHPLCKKNAITIRDLENEPIILCKGGYEPPIIDMFKQINVPLRAEYVISTVTTALNMIQEGLGIAILAELS
LTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=27.710843373494, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=28.2258064516129, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI157672245, Length=206, Percent_Identity=27.1844660194175, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=22.1774193548387, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788887, Length=275, Percent_Identity=26.9090909090909, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788748, Length=245, Percent_Identity=23.265306122449, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787601, Length=182, Percent_Identity=26.3736263736264, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788481, Length=273, Percent_Identity=26.007326007326, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786401, Length=250, Percent_Identity=28.8, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=25.2032520325203, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789204, Length=290, Percent_Identity=23.448275862069, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=24.7058823529412, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081904, Length=205, Percent_Identity=26.3414634146341, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789506, Length=231, Percent_Identity=25.974025974026, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=277, Percent_Identity=22.3826714801444, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789440, Length=133, Percent_Identity=35.3383458646617, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790208, Length=259, Percent_Identity=21.6216216216216, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI2367136, Length=258, Percent_Identity=24.031007751938, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32304; Mature: 32172

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTD
CCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEE
VGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKNAI
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQINVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTD
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEE
VGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKNAI
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQINVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]