| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is topB [H]
Identifier: 118477367
GI number: 118477367
Start: 1837803
End: 1839947
Strand: Direct
Name: topB [H]
Synonym: BALH_1686
Alternate gene names: 118477367
Gene position: 1837803-1839947 (Clockwise)
Preceding gene: 118477365
Following gene: 118477368
Centisome position: 34.96
GC content: 37.3
Gene sequence:
>2145_bases ATGAAATTAATTATTGCCGAGAAACCAGATCAAGGTTTGGCTCTTGTTTCACAATTTAAATATCGCCGGAAAGATGGATA TTTAGAAGTAGAAGCGAATGAGTTATTTCCAAATGGAGCGTACTGTACATGGGCAATTGGTCATTTGACGCAGTTATGTA ATCCAGAGCATTATCACGCAGAGTGGAAAAAATGGTCACTTAATACGTTACCAATGATTCCAGAGCGTTTTCAATTTGAA GTAACAAAGTCAAAGTATAAGCAATTTAACGTTGTGAAACAGCTGTTACATAATCCGCAAGTAACAGAAATTATTCACGC GGGCGATGCCGGGCGTGAAGGGGAATTGATTGTACGAAATATTATTAACCTTTGCAACGTGCAAAAGCCGATGAAACGTC TATGGATTTCATCTTTAACGAAGCAAGCTATTTATCAAGGTTTTAAAAATTTACTGGATGAATCAGATACAATCAATACG TATTACGAAGCATATACAAGATCGTGCGCTGACTGGGTCGTTGGTATGAATGCATCGCGTGTCTTTAGTATTTTGCTAAA GAAAAAAGGAATGAACGATGTATTTTCAGCGGGTCGTGTACAAACGCCGACACTCGCATTAATCGTAAAGCGTGAAAAAG AAATAGAAAACTTTAAGTCTGAGCCGTTTTGGGAAGTGTTCGCAACCTTTAATATAGAAGGAAAGAAGTATGAGGGGAAA TGGGAGAAGGACAATGAATCTCGCCTAAAAGACCCTGATATGGCAAATAAAATTGCGGCATTTTGCCAAGGGAAACCAGC TGAAGTAAAGGAAATGAAAACGGAGCGTAAAGAGTTTCAGCCACCGCTTTTATTTAACTTATCTTCACTGCAAGCTACGG CAAATAAAGCATTCAAATTTTCACCGAAAAAGACACTTGATATAACGCAAGCATTATATCAAAAAGGGATTGTCTCTTAT CCTCGTTCAGATTCCAACTATGTGACACAAGGAGAGGCAGCAACGTTCCCTGATATTTTACAGAAGTTAAGTCAGTTCGA TGAATATAAAGGGTTATTACCAGCACCAGTTGAATCCATTATGAACAATAAGCGTTATGTGAATGAAAAGAAAGTAACAG ATCACTACGCTATTATTCCGACAGAGCAAGTTACAAACCCAAGCAGATTATCAGGTGATGAAAAGAAAATTTACGATATG ATTGTAAGGAGACTTATTGCGGCTCACTATGAAGTTGCAATCTTTGATTATACGACGATTATAACGCTTGTAGATGAACG TGCTGAATTCATTTCAAAAGGAAAACAGCAAATTCAAGAAGGTTGGCGTAAAGTTATTTTCCAAGATGATAAAGATGATG AAACAATTCTTCCGATTGTAGTTGAAGGTGAACAAGGGAAAGTTGTAAAGGTGAAAGTGAAAGAAGGAAAAACACAGCCA CCGAAGCGTTATACAGAAGGACAACTTATTACGTTAATGAAAACGGCAGGTAAGTATTTGGAGAACGAAGAACTTGAGAA AGTATTAAAGAAAACAGAAGGTTTAGGTACAGAAGCGACTCGCGCTGGAATTATTACGATGCTGAAAGACCGTAAATATA TAGATGTGAAGAAGAACCAAGTGTATGCAACCGATAAAGGGAAAGTATTAATTACCGCAATCGGAGACAAAATACTAGCT TCACCAGAAATGACAGCGAAATGGGAGCAGCGTCTTGCAGAAATTGGCGAAGGCACAGCATCACCGGCTACATTTATGGA ACAAACGAAAAAGCTATCAGCAAAAATTATTGAAGATGCAGTGGAAATGTCGGAAAAATGGGATTTCACTGGATTACATG TTGAGTCGATAGAGCGAAAAGGATCGAAATTTACAACGGGTAAAAAGGTTGGTAGCTGTAAAAAATGTGATGGCGATGTA ATTGATAAGTCAACGTTTTACGGCTGTTCTAATTACAACACGACACAATGTGACTTTACCATCTCGAAGAAGATATTAAG TAAAACAATTTCGCAAAAGAATATGACAAAGCTCTTAAAAGGTGAAAAGACCGATTTAATTAAAGGCTTTAAAAAGGGCG AGAAAACATTTGATGCGAAGTTAGAGTGGAAAGATAATAAGATTAATTTTGTATTTGAGAATTAA
Upstream 100 bases:
>100_bases GGGATAACCCGCGAATGATAAATAAGATTGTTGTTTTATCATCGCTTCTAAACATATAGACAACGAAAGTAACACTGGAA TACAGATAGGGAGTTATACA
Downstream 100 bases:
>100_bases GTGGTGTCAACAAATAAAAAAATATGAAAATTAAACTGTATCCTATAGAATAGACACTTAAAAAAGTCTATTCTATAGGA TATTTTTTTGAATAAGTAGT
Product: DNA topoisomerase III
Products: NA
Alternate protein names: DNA topoisomerase I; Omega-protein; Relaxing enzyme; Swivelase; Untwisting enzyme [H]
Number of amino acids: Translated: 714; Mature: 714
Protein sequence:
>714_residues MKLIIAEKPDQGLALVSQFKYRRKDGYLEVEANELFPNGAYCTWAIGHLTQLCNPEHYHAEWKKWSLNTLPMIPERFQFE VTKSKYKQFNVVKQLLHNPQVTEIIHAGDAGREGELIVRNIINLCNVQKPMKRLWISSLTKQAIYQGFKNLLDESDTINT YYEAYTRSCADWVVGMNASRVFSILLKKKGMNDVFSAGRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGKKYEGK WEKDNESRLKDPDMANKIAAFCQGKPAEVKEMKTERKEFQPPLLFNLSSLQATANKAFKFSPKKTLDITQALYQKGIVSY PRSDSNYVTQGEAATFPDILQKLSQFDEYKGLLPAPVESIMNNKRYVNEKKVTDHYAIIPTEQVTNPSRLSGDEKKIYDM IVRRLIAAHYEVAIFDYTTIITLVDERAEFISKGKQQIQEGWRKVIFQDDKDDETILPIVVEGEQGKVVKVKVKEGKTQP PKRYTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDVKKNQVYATDKGKVLITAIGDKILA SPEMTAKWEQRLAEIGEGTASPATFMEQTKKLSAKIIEDAVEMSEKWDFTGLHVESIERKGSKFTTGKKVGSCKKCDGDV IDKSTFYGCSNYNTTQCDFTISKKILSKTISQKNMTKLLKGEKTDLIKGFKKGEKTFDAKLEWKDNKINFVFEN
Sequences:
>Translated_714_residues MKLIIAEKPDQGLALVSQFKYRRKDGYLEVEANELFPNGAYCTWAIGHLTQLCNPEHYHAEWKKWSLNTLPMIPERFQFE VTKSKYKQFNVVKQLLHNPQVTEIIHAGDAGREGELIVRNIINLCNVQKPMKRLWISSLTKQAIYQGFKNLLDESDTINT YYEAYTRSCADWVVGMNASRVFSILLKKKGMNDVFSAGRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGKKYEGK WEKDNESRLKDPDMANKIAAFCQGKPAEVKEMKTERKEFQPPLLFNLSSLQATANKAFKFSPKKTLDITQALYQKGIVSY PRSDSNYVTQGEAATFPDILQKLSQFDEYKGLLPAPVESIMNNKRYVNEKKVTDHYAIIPTEQVTNPSRLSGDEKKIYDM IVRRLIAAHYEVAIFDYTTIITLVDERAEFISKGKQQIQEGWRKVIFQDDKDDETILPIVVEGEQGKVVKVKVKEGKTQP PKRYTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDVKKNQVYATDKGKVLITAIGDKILA SPEMTAKWEQRLAEIGEGTASPATFMEQTKKLSAKIIEDAVEMSEKWDFTGLHVESIERKGSKFTTGKKVGSCKKCDGDV IDKSTFYGCSNYNTTQCDFTISKKILSKTISQKNMTKLLKGEKTDLIKGFKKGEKTFDAKLEWKDNKINFVFEN >Mature_714_residues MKLIIAEKPDQGLALVSQFKYRRKDGYLEVEANELFPNGAYCTWAIGHLTQLCNPEHYHAEWKKWSLNTLPMIPERFQFE VTKSKYKQFNVVKQLLHNPQVTEIIHAGDAGREGELIVRNIINLCNVQKPMKRLWISSLTKQAIYQGFKNLLDESDTINT YYEAYTRSCADWVVGMNASRVFSILLKKKGMNDVFSAGRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGKKYEGK WEKDNESRLKDPDMANKIAAFCQGKPAEVKEMKTERKEFQPPLLFNLSSLQATANKAFKFSPKKTLDITQALYQKGIVSY PRSDSNYVTQGEAATFPDILQKLSQFDEYKGLLPAPVESIMNNKRYVNEKKVTDHYAIIPTEQVTNPSRLSGDEKKIYDM IVRRLIAAHYEVAIFDYTTIITLVDERAEFISKGKQQIQEGWRKVIFQDDKDDETILPIVVEGEQGKVVKVKVKEGKTQP PKRYTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDVKKNQVYATDKGKVLITAIGDKILA SPEMTAKWEQRLAEIGEGTASPATFMEQTKKLSAKIIEDAVEMSEKWDFTGLHVESIERKGSKFTTGKKVGSCKKCDGDV IDKSTFYGCSNYNTTQCDFTISKKILSKTISQKNMTKLLKGEKTDLIKGFKKGEKTFDAKLEWKDNKINFVFEN
Specific function: The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another [H]
COG id: COG0550
COG function: function code L; Topoisomerase IA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI10835218, Length=674, Percent_Identity=24.7774480712166, Blast_Score=143, Evalue=5e-34, Organism=Homo sapiens, GI4507635, Length=458, Percent_Identity=25.764192139738, Blast_Score=107, Evalue=4e-23, Organism=Escherichia coli, GI1788061, Length=619, Percent_Identity=33.6025848142165, Blast_Score=357, Evalue=2e-99, Organism=Escherichia coli, GI1787529, Length=518, Percent_Identity=28.1853281853282, Blast_Score=135, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17555378, Length=626, Percent_Identity=27.7955271565495, Blast_Score=160, Evalue=2e-39, Organism=Caenorhabditis elegans, GI32563869, Length=500, Percent_Identity=25.6, Blast_Score=119, Evalue=7e-27, Organism=Saccharomyces cerevisiae, GI6323263, Length=629, Percent_Identity=25.7551669316375, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24585251, Length=702, Percent_Identity=24.7863247863248, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI24640096, Length=493, Percent_Identity=24.3407707910751, Blast_Score=100, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003601 - InterPro: IPR013497 - InterPro: IPR013824 - InterPro: IPR013825 - InterPro: IPR000380 - InterPro: IPR003602 - InterPro: IPR013498 - InterPro: IPR006171 [H]
Pfam domain/function: PF01131 Topoisom_bac; PF01751 Toprim; PF01396 zf-C4_Topoisom [H]
EC number: =5.99.1.2 [H]
Molecular weight: Translated: 81588; Mature: 81588
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: PS00396 TOPOISOMERASE_I_PROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLIIAEKPDQGLALVSQFKYRRKDGYLEVEANELFPNGAYCTWAIGHLTQLCNPEHYHA CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCCCEEEHHHHHHHHHCCCCHHCC EWKKWSLNTLPMIPERFQFEVTKSKYKQFNVVKQLLHNPQVTEIIHAGDAGREGELIVRN CHHCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCHHHHH IINLCNVQKPMKRLWISSLTKQAIYQGFKNLLDESDTINTYYEAYTRSCADWVVGMNASR HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH VFSILLKKKGMNDVFSAGRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGKKYEGK HHHHHHHHCCCHHHHHCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEEEEECCCEECCC WEKDNESRLKDPDMANKIAAFCQGKPAEVKEMKTERKEFQPPLLFNLSSLQATANKAFKF CCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCEEC SPKKTLDITQALYQKGIVSYPRSDSNYVTQGEAATFPDILQKLSQFDEYKGLLPAPVESI CCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH MNNKRYVNEKKVTDHYAIIPTEQVTNPSRLSGDEKKIYDMIVRRLIAAHYEVAIFDYTTI HCCCHHCCCCCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEHHHH ITLVDERAEFISKGKQQIQEGWRKVIFQDDKDDETILPIVVEGEQGKVVKVKVKEGKTQP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCC PKRYTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDVKKNQ CCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCEEEEECCE VYATDKGKVLITAIGDKILASPEMTAKWEQRLAEIGEGTASPATFMEQTKKLSAKIIEDA EEEECCCCEEEEEECCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VEMSEKWDFTGLHVESIERKGSKFTTGKKVGSCKKCDGDVIDKSTFYGCSNYNTTQCDFT HHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEECHH ISKKILSKTISQKNMTKLLKGEKTDLIKGFKKGEKTFDAKLEWKDNKINFVFEN HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEECC >Mature Secondary Structure MKLIIAEKPDQGLALVSQFKYRRKDGYLEVEANELFPNGAYCTWAIGHLTQLCNPEHYHA CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCCCEEEHHHHHHHHHCCCCHHCC EWKKWSLNTLPMIPERFQFEVTKSKYKQFNVVKQLLHNPQVTEIIHAGDAGREGELIVRN CHHCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCHHHHH IINLCNVQKPMKRLWISSLTKQAIYQGFKNLLDESDTINTYYEAYTRSCADWVVGMNASR HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH VFSILLKKKGMNDVFSAGRVQTPTLALIVKREKEIENFKSEPFWEVFATFNIEGKKYEGK HHHHHHHHCCCHHHHHCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEEEEECCCEECCC WEKDNESRLKDPDMANKIAAFCQGKPAEVKEMKTERKEFQPPLLFNLSSLQATANKAFKF CCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCEEC SPKKTLDITQALYQKGIVSYPRSDSNYVTQGEAATFPDILQKLSQFDEYKGLLPAPVESI CCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH MNNKRYVNEKKVTDHYAIIPTEQVTNPSRLSGDEKKIYDMIVRRLIAAHYEVAIFDYTTI HCCCHHCCCCCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEHHHH ITLVDERAEFISKGKQQIQEGWRKVIFQDDKDDETILPIVVEGEQGKVVKVKVKEGKTQP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCC PKRYTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIITMLKDRKYIDVKKNQ CCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCEEEEECCE VYATDKGKVLITAIGDKILASPEMTAKWEQRLAEIGEGTASPATFMEQTKKLSAKIIEDA EEEECCCCEEEEEECCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VEMSEKWDFTGLHVESIERKGSKFTTGKKVGSCKKCDGDVIDKSTFYGCSNYNTTQCDFT HHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEECHH ISKKILSKTISQKNMTKLLKGEKTDLIKGFKKGEKTFDAKLEWKDNKINFVFEN HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1329032 [H]