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The map label for this gene is deoC [H]

Identifier: 118477355

GI number: 118477355

Start: 1824878

End: 1825558

Strand: Direct

Name: deoC [H]

Synonym: BALH_1673

Alternate gene names: 118477355

Gene position: 1824878-1825558 (Clockwise)

Preceding gene: 118477354

Following gene: 118477356

Centisome position: 34.71

GC content: 37.59

Gene sequence:

>681_bases
GTGAAGATAATGAACATTGCAAAGTTAATTGACCATACAATTTTAAAAGCTAATACTACTAAAGAAGATGTTATGAAAGT
AATCGAAGAAGCAAAGGAATATAAATTCGCTTCTGTTTGTATTAATCCTACATGGGTGAAGCTAGCTGCTGAAGAATTAG
CTGGACATGATGTAGATGTTTGTACTGTAATCGGTTTCCCATTAGGAGCAAGCACGACTGAAACAAAAGCATTTGAAACA
AAAGATGCTATCGCAAAAGGTGCAACTGAAGTTGATATGGTAATCAACGTAGGCGCTTTAAAAGATGGCGACAACGAACT
TGTTGAAAAAGACATTTATGAAGTAGTACAAGCAGCAAAAGGAAAAGCTCTTGTAAAAGTAATCATTGAAACTTGTCTAT
TAACAGATGAAGAGAAAGTACGCGCTTGTGAATTATCAGTAAAAGCTGGTGCTGACTTCGTAAAAACTTCAACTGGATTT
TCAACTGGCGGAGCAACTGCTGAAGATATTGCATTAATGCGTAAAACAGTTGGACCAAACGTTGGTGTAAAAGCATCTGG
TGGTGTTCGTACACGTGAAGATGCAGAAAAAATGGTAGCTGCTGGAGCTTCTCGCGTTGGAGCAAGTGCTAGTGTTGCAA
TCGTATTAAATGATGCAAAAGGTGCTACAGATAACTACTAA

Upstream 100 bases:

>100_bases
GTATAAGAAAATTACTTTTAAAAGAATGAACAAAATTTCAAAAGTGTATTTACATTTGTTCAACTAAGAGTTAGAATGAA
GTTGTTAAAAGATATGAGGA

Downstream 100 bases:

>100_bases
TCATTAATGAAGTCAAAAGCAATAGATACACAAAGTAAAGTGTATCTATTGCTTTAACAATTAAAAGAGATGTAAGCGGA
TACGAATGGGAGGAGACGGC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MKIMNIAKLIDHTILKANTTKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGASTTETKAFET
KDAIAKGATEVDMVINVGALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGF
STGGATAEDIALMRKTVGPNVGVKASGGVRTREDAEKMVAAGASRVGASASVAIVLNDAKGATDNY

Sequences:

>Translated_226_residues
MKIMNIAKLIDHTILKANTTKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGASTTETKAFET
KDAIAKGATEVDMVINVGALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGF
STGGATAEDIALMRKTVGPNVGVKASGGVRTREDAEKMVAAGASRVGASASVAIVLNDAKGATDNY
>Mature_226_residues
MKIMNIAKLIDHTILKANTTKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGASTTETKAFET
KDAIAKGATEVDMVINVGALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGF
STGGATAEDIALMRKTVGPNVGVKASGGVRTREDAEKMVAAGASRVGASASVAIVLNDAKGATDNY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=187, Percent_Identity=33.1550802139037, Blast_Score=75, Evalue=4e-14,
Organism=Escherichia coli, GI1790841, Length=214, Percent_Identity=39.7196261682243, Blast_Score=107, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17533015, Length=219, Percent_Identity=30.5936073059361, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19922098, Length=176, Percent_Identity=34.0909090909091, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23783; Mature: 23783

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIMNIAKLIDHTILKANTTKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDV
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHCCCCCCE
CTVIGFPLGASTTETKAFETKDAIAKGATEVDMVINVGALKDGDNELVEKDIYEVVQAAK
EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
GKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTGGATAEDIALMRKTVGPN
CHHHHHHHHHHHHCCCHHHHHHHEEEHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCC
VGVKASGGVRTREDAEKMVAAGASRVGASASVAIVLNDAKGATDNY
CCEECCCCCCCHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MKIMNIAKLIDHTILKANTTKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDV
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHCCCCCCE
CTVIGFPLGASTTETKAFETKDAIAKGATEVDMVINVGALKDGDNELVEKDIYEVVQAAK
EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
GKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTGGATAEDIALMRKTVGPN
CHHHHHHHHHHHHCCCHHHHHHHEEEHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCC
VGVKASGGVRTREDAEKMVAAGASRVGASASVAIVLNDAKGATDNY
CCEECCCCCCCHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA